Gene detail

Detailed information of ANN30380-RA in Montipora grisea

Genomic Location: Scaffold_411__1_contigs__length_98886:10833...12851
NR annotation: MCE2487293.1, UvrD-helicase domain-containing protein [Desulfurellaceae bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN30380-RA

ATGGAGAATGGAGCGGTGAGCAACGAGACGCGACCTGTCAGATACACGCTGCGCCCGGAGCCCGACGACCGGGCCAAGCGCTTCCTGATCGACTACAAGGAGGAACTCAACCCCTCCCAGTACGAGGCGGCCGTCACCCATCAGGGACCGCTGCTGGTCCTGGCCGGGGCGGGCAGTGGCAAGACCCGCACCCTGGTGTTCCGGGTGGCGCGCATGGTCGAGGAGGGGATTGATCCGGCCTCCATCCTGCTGCTGACCTTTACCCGGCGGGCGGCCGAAGAGATGCTGCAACGGGTCGAGGCGCTCCTGGGCAGCCGCTGCGACCGGGTCACCGGCGGCACCTTTCACTCCTTCGCCAATACCATCCTGCGCCGCTACGCTCAGCTGCTGGGCTTTGCCAGTGCCTTCACCATTCTAGACCGCGGCGATTCCGAGGACGTGATTAATCTGATCCGCAGCCGCATGGGCCTGGACAAGAAGGAGCGCCGCTTTCCTCGCAAGCAGACCATTCTGGAAATCTTGAGCCTGGCGGCTAACAAGACCTGCGGTGTGGCTGCGGTGCTGGACGAACAGTTTCCGCACCTATCCAACGAGCTGGCCGAGCTGGGCCAGATTGCGGACTACTACCGGGACTACAAGCGTGAGCGCAGCCTGCTCGACTATGACGACCTGCTCAGCTATCTGTGCGAGCTGCTGCGCGGTCATCCCGAGCTGGCCGAGCGGCTGTCGCACAGCTTCCGCTACATCATGGTCGATGAGTACCAGGACACCAACCGGCTCCAGGCCGACATCGTCCGACTGCTGGCCCACTCCCACGACAACGTCATGGCGGTCGGCGACGACGCCCAGTCGATCTACAGCTTTCGGGGCGCGACGGTGCGCAACATCTTCGAGTTTCCCGACCTCTTTCCCGGCACGAAAGTCATCAAGCTGGAAGAGAATTACCGCAGCACCCAGCCGATCCTGGATCTGTCCAACGAAATCATCCTGCAGGCCAAGGAGAGCTATACCAAAAACCTGTTCACCCGCCGTGAGACCGGCATCAGGCCGGTCCTGGTTGAGGCCGACAGCGAACGCTACCAGTCGCGCTTTGTCGGCCAGAAAATTCTGGAGCTGCACGAGTCCGGGGTGTCGCTGCCCGAGATCGCCGTCCTGTTCCGCTCCAGCTTCCACTCCTTCGATCTGGAGATCGAGCTGGGCCGACGCAACCTCGAGTTCGTCAAGCGGGGCGGCTTCAAATTCATCGAAACCACCCACATCAAGGACGTGCTGGCCCATCTGCGGATTATTGCCAACCCTCAGGACGCGGTCTCGTGGTACCGCGTCCTGCTGCTGCTCGACGGCGTCGGAGCCAAGAGCAGCGAAAAGATCCTGGCCCAGGTACTCGACGCTCCCGACCCGTTCCAGGGCTTGGCCGGCTATCGGGGCCGCGGCGCGGTCAACACGGCCTTGAAGAGCCTGGCTGAGGCCCTGCAACAGGCCAGGGACGAGGGGCTGAAACCGGCCGAACAGCTCGAAGTCGTCGTGCGCTACTATGAGCCGATCCTGAAACACCGCCACCGTGACGACTATCCCAAGCGCCAGAAGGACCTGGAGCACTTCACCATCGTCACCGAGCGTTACCGCAGCCTGGACCGGATGCTGTCCGACATGGCGCTTGAGCCGCCGACTAGCAGCGTGGACAATGTCCTGGCCACCGAGGGCGAGGACGAGGGTCTGTTGACCCTGTCAACCATTCACTCGGCCAAGGGCCTGGAGTGGCACTCGGTGTTCATTATCTGGGCGGTCGAAGGCCGTTTTCCGAGCCTGTACAACAAAGATGACGACGAACTCGAAGAAGAGCGGCGGCTGATGTATGTGGCGGCCACCCGGGCCAAAGAGAACCTGTTTATCACCTACCCGATCAACGTCTTTGATCGGGCCACCGGCGTGCTGCTCAACCGCCCGTCGCGTTTTTTGGACGGCATTCCCCGGCGCATTCTGACCCCGGTCATGCTGATGGAAGACGACGACGAGTAA

Transcript

ANN30380-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P56255	ATP-dependent DNA helicase PcrA OS=Geobacillus stearothermophilus OX=1422 GN=pcrA PE=1 SV=1
Q5HN29	ATP-dependent DNA helicase PcrA OS=Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A) OX=176279 GN=pcrA PE=3 SV=1
Q8CRT9	ATP-dependent DNA helicase PcrA OS=Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200) OX=176280 GN=pcrA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011730 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13361 all species →	UvrD_C	UvrD-like helicase C-terminal domain	Domain	Interproscan
PF00580 all species →	UvrD-helicase	UvrD/REP helicase N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014017 all species →	Domain	UvrD-like DNA helicase, C-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014016 all species →	Domain	UvrD-like helicase, ATP-binding domain	Interproscan
IPR013986 all species →	Homologous_superfamily	DExx box DNA helicase domain superfamily	Interproscan
IPR000212 all species →	Family	DNA helicase, UvrD/REP type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11070 all species →	UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0000725 all species →	Biological Process	recombinational repair	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0043138 all species →	Molecular Function	3'-5' DNA helicase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03657	uvrD, pcrA; ATP-dependent DNA helicase UvrD/PcrA	EC:5.6.2.4	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.