Gene detail

Detailed information of ANN30503-RA in Montipora grisea

Genomic Location: Scaffold_506__1_contigs__length_90881:8129...10235
NR annotation: MYA68610.1, hypothetical protein [Candidatus Poribacteria bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN30503-RA

ATGAAACGTGCTCTTCCCCTCATCTACATGCTGTCTATTGTTTCGATTTTGTGGCTATCAACAACTTTGGGTCTATACACGGCTGTGGCAGAACCAAACAGTGCCTACATGGCGTTACCAGAGGGTGCAAAAGCACGCCTCGGTAAGGGAAGTATAGGCGAGATAACGTATTCTCCAGACGGGAACCGCTTAGCAGTCGCCAGTAGCATCGGAATATGGATTTACGATGCACACAGTCTTGTAGAACTGGATCTGTTCACTGGACATACAGATTCCATCACAAGCATAGCGTTCAGTCCGGATGGCAGCACGCTTGCAAGTAGCAGTTATGATGAAACAGTCCGACTGTGGGATGCTGCTACCGGTAGGCTTAAATCCGTCCTCACTGGAGATATGGACCGGGTTAACAGCATTGCATTCAGTCCGGATGGTAGTATCCTTGCAGGTGGGGGTTCAAGTGAGAGTGTGCACCTCTGGGATCCCGTGAAGGGTGAACATATAACGACACTCTCTGGGCATACCCGCACTGTCAATACAGTTGCGTTCAGTCCGGACGGAGGAACCCTCGCGAGTGGTGCTTGGGACAATACGGTGCGACTGTGGGACATCGCTACTGGAAAACAGAAATATACCCTCATGGGGCATACCTTCTTCGGTGAAGACACCTCCGGCATTTCTAATGTAGCTTTCAGTGCCGACGGACAGACGCTCGCGAGTGCGGCTTTCAATGAGGAAACTGTGCGCCTCTGGGATGCCGTCACGGGAGAACAGAAAAGCATCCTTGATACGGATAAGATTAAAAGCCTTGCTTTCGGTCCAGATGGAAAAACCCTCGCAACTGCGGGGCAATACACGTTGAATCTATGGGATGTTGCCAGTGGTGAACACAAAGCGGCTCTCTCCGGACATACCCGGTTTATGGGACCCGTTGCTTTCAGCCCAGATGGAAAAACGCTCATGGGGGGCGACTGTTTCTTATGGGATGCGAGGAATGGGGAGCAAAAGGGCGCGATTACCGGACATCTGCCAAATGGAAGGAGTATTGCATTCGCACCTGATGGTGCCACACTTGCAACTGTAGGCAGTCGGCACATCGTGCATCTGTGGGATATTACCAATGGACGACACAAAACGACGCTCATTGGTGCGAGAACCGATGACTGGATCTCCAGTATTGCGTTCAGTCCTGATGGGAAAACGCTTGCAGGCGGAAGTGGATGGCGGATATGGCTCTGGGATGTTGAAAAGAGATACCTCAAAACGGTCATCAAAGGGTTTACGGGAAATAGTGTCTCTGGCAGCGGAATTGCCACTGTTGCGTTCAGCCCCGATGGACGTTTCCTCGCAAGTGGAAGTGGACATGGCGATAGAAAGGTCCAGATCTGGCATGGCGGGCGGACGCATAAAGTGACACTCACCGGGCATCGGGAAGGGATTACCTCTATCGCCTTCAGTCCAGACAGTCGTACGCTTGCAAGTGGAAGTCGGGATCACACGGTCCGCCTGTGGGATGTCGTCAGTGGCATGCATGAAATGACGCTCACCGGGCATGCGGGTGGTGTCAGTAGCGTTGCGTTCAGTCCCGATGGAAAAACCCTCGCAAGCGGTGGCGAGCGAGATGACAGAACAATACGGCTCTGGGATGCTGCTACGGGGGTACACAAAATGACGCTCACCGGGCATGCGGGTGGTGTCAGTAGCGTTGCGTTCAGTCCCGATGGAAAAACCCTCGCAAGCGGTGGCGAGCGAGATGACAGAACAATACGGCTCTGGGACATTGACACAGGTATTGAAAAAAAGATGCTCGCTGGACATACGGACGCGGTCTCAAGTGTCGCCTTCAACCCGGACGGTCGTACACTCGCAAGTGGCAGTTGGGATGGTACGGTGATACTTTGGAATTTCACACCTGAAGGAGAAACGCAGCAACTTGCTGAGGACGTAAACCGCGACGGCATGGTAAACTTACAAGATTTGAGAATCGTCGCATCACAGTTCGGGCAGCATGGAACACATGAGGCAGATGTCAATACCGATGGCGTTGTCAACATCATAGATCTCGTTCTGGTCGCTGGGGGCCCTTGGAACAGGGGATAA

Transcript

ANN30503-RA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00404	Dockerin_1	Dockerin type I domain	Domain	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF07676	PD40	WD40-like Beta Propeller Repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002105	Repeat	Dockerin type I repeat	Interproscan
IPR036439	Homologous_superfamily	Dockerin domain superfamily	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR050349	Family	WD repeat LIS1/nudF dynein regulation	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR011659	Repeat	WD40-like beta propeller	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44129	WD REPEAT-CONTAINING PROTEIN POP1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000272	Biological Process	polysaccharide catabolic process	Interproscan
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan