Genomic Location: Scaffold_506__1_contigs__length_90881:38467...40363
NR annotation: RKU23774.1, glucose-1-phosphate adenylyltransferase [Candidatus Poribacteria bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN30506-RA |
| Transcript |
| ANN30506-RA |
| Protein |
| ANN30506-RA |
| UniProt accession | Description |
|---|---|
| B1WT08 | Glucose-1-phosphate adenylyltransferase OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) OX=43989 GN=glgC PE=3 SV=1 |
| B7KDB8 | Glucose-1-phosphate adenylyltransferase OS=Gloeothece citriformis (strain PCC 7424) OX=65393 GN=glgC PE=3 SV=1 |
| B8HM61 | Glucose-1-phosphate adenylyltransferase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=glgC PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0011292 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00475 all species → | IGPD | Imidazoleglycerol-phosphate dehydratase | Family | Interproscan |
| PF00483 all species → | NTP_transferase | Nucleotidyl transferase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR029044 all species → | Homologous_superfamily | Nucleotide-diphospho-sugar transferases | Interproscan |
| IPR038494 all species → | Homologous_superfamily | Imidazole glycerol phosphate dehydratase domain superfamily | Interproscan |
| IPR020568 all species → | Homologous_superfamily | Ribosomal protein uS5 domain 2-type superfamily | Interproscan |
| IPR000807 all species → | Family | Imidazoleglycerol-phosphate dehydratase | Interproscan |
| IPR005835 all species → | Domain | Nucleotidyl transferase domain | Interproscan |
| IPR020565 all species → | Conserved_site | Imidazoleglycerol-phosphate dehydratase, conserved site | Interproscan |
| IPR011831 all species → | Family | Glucose-1-phosphate adenylyltransferase | Interproscan |
| IPR005836 all species → | Conserved_site | ADP-glucose pyrophosphorylase, conserved site | Interproscan |
| IPR011004 all species → | Homologous_superfamily | Trimeric LpxA-like superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43523 all species → | GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000105 all species → | Biological Process | L-histidine biosynthetic process | Interproscan |
| GO:0004424 all species → | Molecular Function | imidazoleglycerol-phosphate dehydratase activity | Interproscan |
| GO:0009058 all species → | Biological Process | biosynthetic process | Interproscan |
| GO:0005978 all species → | Biological Process | glycogen biosynthetic process | Interproscan |
| GO:0008878 all species → | Molecular Function | glucose-1-phosphate adenylyltransferase activity | Interproscan |
ANN30506-RA.Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
