Detailed information of ANN30514-RA in Montipora grisea

Genomic Location: Scaffold_8308__1_contigs__length_22867:14125...16142
NR annotation: NIP32012.1, 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB [Candidatus Dadabacteria bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P94464Probable ribosomal RNA small subunit methyltransferase B OS=Bacillus subtilis (strain 168) OX=224308 GN=rsmB PE=3 SV=2
P72943Probable ribosomal RNA small subunit methyltransferase B OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=rsmB PE=3 SV=1
Q7MYI0Ribosomal RNA small subunit methyltransferase B OS=Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01) OX=243265 GN=rsmB PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01029NusBNusB familyDomainInterproscan
PF00834Ribul_P_3_epimRibulose-phosphate 3 epimerase familyDomainInterproscan
PF01189Methyltr_RsmB-F16S rRNA methyltransferase RsmB/FFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000056FamilyRibulose-phosphate 3-epimerase-likeInterproscan
IPR026019FamilyRibulose-phosphate 3-epimeraseInterproscan
IPR001678DomainSAM-dependent methyltransferase RsmB-F/NOP2-type domainInterproscan
IPR013785Homologous_superfamilyAldolase-type TIM barrelInterproscan
IPR035926Homologous_superfamilyNusB-like superfamilyInterproscan
IPR018314Conserved_siteBacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved siteInterproscan
IPR006027DomainNusB/RsmB/TIM44Interproscan
IPR029063Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR011060Homologous_superfamilyRibulose-phosphate binding barrelInterproscan
IPR023267FamilyRNA (C5-cytosine) methyltransferaseInterproscan
IPR049560DomainSAM-dependent methyltransferase RsmB-F/NOP2-type, catalytic coreInterproscan
IPR004573FamilyrRNA small subunit methyltransferase BInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11749RIBULOSE-5-PHOSPHATE-3-EPIMERASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005975Biological Processcarbohydrate metabolic processInterproscan
GO:0016857Molecular Functionracemase and epimerase activity, acting on carbohydrates and derivativesInterproscan
GO:0004750Molecular FunctionD-ribulose-phosphate 3-epimerase activityInterproscan
GO:0006098Biological Processpentose-phosphate shuntInterproscan
GO:0008168Molecular Functionmethyltransferase activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0009052Biological Processpentose-phosphate shunt, non-oxidative branchInterproscan
GO:0044262Biological Processobsolete cellular carbohydrate metabolic processInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0001510Biological ProcessRNA methylationInterproscan
GO:0008173Molecular FunctionRNA methyltransferase activityInterproscan
GO:0006364Biological ProcessrRNA processingInterproscan
GO:0008649Molecular FunctionrRNA methyltransferase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K01783rpe, RPE; ribulose-phosphate 3-epimeraseEC:5.1.3.1
Carbon fixation in photosynthetic organismsko00710deepkoala

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