Genomic Location: Scaffold_4393__1_contigs__length_32407:404...1147
NR annotation: MBY6134505.1, tRNA glutamyl-Q(34) synthetase GluQRS [Nocardioides marinus]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN30531-RA |
| Transcript |
| ANN30531-RA |
| Protein |
| ANN30531-RA |
| UniProt accession | Description |
|---|---|
| O68142 | Glutamyl-Q tRNA(Asp) synthetase OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) OX=272942 GN=gluQ PE=3 SV=2 |
| Q21X72 | Glutamyl-Q tRNA(Asp) synthetase OS=Albidiferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118) OX=338969 GN=gluQ PE=3 SV=1 |
| A1VRF5 | Glutamyl-Q tRNA(Asp) synthetase OS=Polaromonas naphthalenivorans (strain CJ2) OX=365044 GN=gluQ PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0062355 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00749 all species → | tRNA-synt_1c | tRNA synthetases class I (E and Q), catalytic domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR014729 all species → | Homologous_superfamily | Rossmann-like alpha/beta/alpha sandwich fold | Interproscan |
| IPR020058 all species → | Domain | Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain | Interproscan |
| IPR049940 all species → | Family | Glutamyl-Q tRNA(Asp) synthetase/Glutamate--tRNA ligase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43311 all species → | GLUTAMATE--TRNA LIGASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004812 all species → | Molecular Function | aminoacyl-tRNA ligase activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0043039 all species → | Biological Process | tRNA aminoacylation | Interproscan |
| GO:0004818 all species → | Molecular Function | glutamate-tRNA ligase activity | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0006424 all species → | Biological Process | glutamyl-tRNA aminoacylation | Interproscan |
ANN30531-RA.Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
