Gene detail

Detailed information of ANN30572-RA in Montipora grisea

Genomic Location: Scaffold_9001__1_contigs__length_20960:1...1212
NR annotation: CAD8132395.1, unnamed protein product [Paramecium octaurelia]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q6P2Q9	Pre-mRNA-processing-splicing factor 8 OS=Homo sapiens OX=9606 GN=PRPF8 PE=1 SV=2
Q99PV0	Pre-mRNA-processing-splicing factor 8 OS=Mus musculus OX=10090 GN=Prpf8 PE=1 SV=2
Q9SSD2	Pre-mRNA-processing-splicing factor 8A OS=Arabidopsis thaliana OX=3702 GN=PRP8A PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10597	U5_2-snRNA_bdg	U5-snRNA binding site 2 of PrP8	Domain	Interproscan
PF10596	U6-snRNA_bdg	U6-snRNA interacting domain of PrP8	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019581	Domain	Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding	Interproscan
IPR027652	Family	Pre-mRNA-processing-splicing factor 8	Interproscan
IPR019580	Domain	Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11140	PRE-MRNA SPLICING FACTOR PRP8	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0030623	Molecular Function	U5 snRNA binding	Interproscan
GO:0000244	Biological Process	spliceosomal tri-snRNP complex assembly	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005681	Cellular Component	spliceosomal complex	Interproscan
GO:0005682	Cellular Component	U5 snRNP	Interproscan
GO:0017070	Molecular Function	U6 snRNA binding	Interproscan
GO:0030619	Molecular Function	U1 snRNA binding	Interproscan
GO:0030620	Molecular Function	U2 snRNA binding	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:0097157	Molecular Function	pre-mRNA intronic binding	Interproscan