Gene detail

Detailed information of ANN30637-RA in Montipora grisea

Genomic Location: Scaffold_177__1_contigs__length_165853:56516...58859
NR annotation: CAE7234923.1, udg, partial [Symbiodinium sp. CCMP2456]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN30637-RA

ATGAAAATAGCAATAGTAGGAAGCGGTTATGTAGGTCTGGTTACAGGGGCTTGTTTTTCTGAAGTAGGAATTGATGTTGTTTGTGTAGATATAGATGAGAAAAAAATCAAAAATCTAAAAAATGGCATCATACCAATATATGAACCAGGGTTAGAAGATATGATTAAACGTAATATGCTAAAAGAACGTTTAGATTTCTCTACAAACCTTGCTGATACTATATCAGATGCTGAAGCAATATTTATTAGTGTGGGTACACCTCCTGATGAAGATGGTAGTGCAGATTTGAAACATGTTCTTGCTGTTGCGAAAGAATGTGGTCGCCATATGAGTGATTACAAATTAATTGTTACAAAAAGTACAGTTCCAGTTGGTACTTCAGAAAAGGTTAGAAATGCAGTTCAGGAAGAATTAGATAAAAGAATGATAGACATACCTTTCGATGTTGCTTCAAATCCAGAGTTTTTAAAAGAAGGAGCAGCTATTGATGATTTTATGAAACCAGATAGAATTGTAATCGGAACTGAAAGTGAAAGAGCAGAAAAACTCCTGAACAAATTATACAAACCATTTACTTTAAATGGACATCCAATTATTTTTATGGATATCGTTTCAGCTGAGATGACCAAATATGCGGCAAACTCAATGTTAGCAACAAAGATTAGTTTTATTAATGATATTGCTAACTTATGCGAAATTGTTGGTGCAGATATCAATAATGTTAGAAAGGGTATAGGGTCAGATTCTCGAATAGGAAAAAAATTCATTTATCCAGGCATAGGTTATGGAGGGTCTTGTTTCCCGAAAGATGTACAAGCTTTAATAAAAACGGCAAGTGAAAATAAGTATGAACTACAAGTGCTTAAAGCTGTTGAGTCTGTAAATAAAGCCCAAAAACTAATCTTGTTTAATAAAATCAATTCGCATTTTAAAGGTGATTTACAAGATAAAACTATTGCAATTTGGGGATTGTCTTTTAAGCCACAAACTGACGATATGCGCGAAGCTCCTTCATTACAAATAATAAAAGAACTACTAATTGCTGGCGCAACCGTTAAAGCCTATGACCCTGTTGCTATAGAAGAAGCAAAACATCATTTCGGAAATACGATCACCTATTGTGAAGATCAATATGAAACATTAATTGAAGCCGATTGTCTTGCAGTTTTAACTGAATGGTCCGAGTTAGAGTTCCTAACTTCAAAGTTATTATCTGAAGATCATGAAGTATTCTGTTTAGATAATTTTTTTACTGGGCAGAAACAAAATATACTTCATTTGACTCAATATCCATATTTTGAACTAATTCGCCACGATGTTATTAACCCATATTTAATAGAAGTAGATGAAATCTATAATTTAGCTTGCCCTGCTTCACCTATTCATTATCAATACAACCCTATAAAAACTATTAAAACGTCGGTAATGGGAGCTATTAATATGTTAGGATTAGCAAAACGAGTAAATGCTAAGATTTTACAAGCATCTACAAGTGAAGTATATGGTAATCCTATGGTACATCCACAACCAGAATCTTATTGGGGAAATGTAAACCCTATAGGGGAAAGGTCTTGTTATGATGAAGGTAAACGAGCAGCAGAAACCCTCTTTAGAGATTACCACGCCCAAAATAATGTAAACATAAAAATTGTTAGAATTTTCAATACTTATGGGCCAAGAATGCACCCAAATGATGGTAGAGTAGTCTCTAATTTTATTGTTCAAGCTTTACAAAATAAAGATATTACAGTTTATGGTAAAGGTGAACAAACCAGAAGTTTTCAATATGTTGATGACTTAATTGAAGGTATGATAAGAACGATGAGAACTGACAATTCATTTACCGGCCCTGTTAATATTGGAAATCCTGATGAGTTTAAGATTATTGAACTCGCAGAAAAAGTAATTAAACTAACTCATTCAAAATCTAAAATAGTATTCCAACCACTACCTAGTGATGACCCTCTAATGAGGCAACCAGATATATCCATAGCTAAGAAGCAATTAGACTGGGAACCAACAATAAAGTTAGATGAAGGATTAGAAAAAACAATTGCCTTCTTTAAAGAGAGGATAAGATAG

Transcript

ANN30637-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O86422	UDP-glucose 6-dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=udg PE=3 SV=2
O32271	UDP-glucose 6-dehydrogenase TuaD OS=Bacillus subtilis (strain 168) OX=224308 GN=tuaD PE=1 SV=1
Q8VZC0	UDP-glucuronic acid decarboxylase 1 OS=Arabidopsis thaliana OX=3702 GN=UXS1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003385 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00984 all species →	UDPG_MGDP_dh	UDP-glucose/GDP-mannose dehydrogenase family, central domain	Domain	Interproscan
PF03720 all species →	UDPG_MGDP_dh_C	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain	Domain	Interproscan
PF16363 all species →	GDP_Man_Dehyd	GDP-mannose 4,6 dehydratase	Domain	Interproscan
PF03721 all species →	UDPG_MGDP_dh_N	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017476 all species →	Family	UDP-glucose/GDP-mannose dehydrogenase	Interproscan
IPR014026 all species →	Domain	UDP-glucose/GDP-mannose dehydrogenase, dimerisation	Interproscan
IPR014027 all species →	Domain	UDP-glucose/GDP-mannose dehydrogenase, C-terminal	Interproscan
IPR016040 all species →	Domain	NAD(P)-binding domain	Interproscan
IPR008927 all species →	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR001732 all species →	Domain	UDP-glucose/GDP-mannose dehydrogenase, N-terminal	Interproscan
IPR028357 all species →	Family	UDP-glucose 6-dehydrogenase, bacterial type	Interproscan
IPR036220 all species →	Homologous_superfamily	UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43750 all species →	UDP-GLUCOSE 6-DEHYDROGENASE TUAD	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016616 all species →	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0051287 all species →	Molecular Function	NAD binding	Interproscan
GO:0000271 all species →	Biological Process	polysaccharide biosynthetic process	Interproscan
GO:0003979 all species →	Molecular Function	UDP-glucose 6-dehydrogenase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00012	UGDH, ugd; UDPglucose 6-dehydrogenase	EC:1.1.1.22	O-Antigen nucleotide sugar biosynthesis	ko00541	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.