Genomic Location: Scaffold_234__1_contigs__length_138361:82094...85150
NR annotation: WP_089939091.1, DNA translocase FtsK [Candidatus Entotheonella palauensis]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN30982-RA |
| Transcript |
| ANN30982-RA |
| Protein |
| ANN30982-RA |
| UniProt accession | Description |
|---|---|
| Q88FS8 | DNA translocase FtsK OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) OX=160488 GN=ftsK PE=3 SV=1 |
| Q81A03 | DNA translocase FtsK OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) OX=226900 GN=ftsK PE=3 SV=1 |
| Q81WP2 | DNA translocase FtsK OS=Bacillus anthracis OX=1392 GN=ftsK PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0013375 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF17854 all species → | FtsK_alpha | FtsK alpha domain | Domain | Interproscan |
| PF13491 all species → | FtsK_4TM | 4TM region of DNA translocase FtsK/SpoIIIE | Domain | Interproscan |
| PF09397 all species → | FtsK_gamma | Ftsk gamma domain | Domain | Interproscan |
| PF01580 all species → | FtsK_SpoIIIE | FtsK/SpoIIIE family | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036390 all species → | Homologous_superfamily | Winged helix DNA-binding domain superfamily | Interproscan |
| IPR050206 all species → | Family | FtsK/SpoIIIE/SftA cell division and DNA translocation | Interproscan |
| IPR041027 all species → | Domain | FtsK alpha domain | Interproscan |
| IPR025199 all species → | Domain | DNA translocase FtsK, 4TM region | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR018541 all species → | Domain | FtsK gamma domain | Interproscan |
| IPR002543 all species → | Domain | FtsK domain | Interproscan |
| IPR036388 all species → | Homologous_superfamily | Winged helix-like DNA-binding domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22683 all species → | SPORULATION PROTEIN RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000166 all species → | Molecular Function | nucleotide binding | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03466 | ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family | - | Chromosome and associated proteins | ko03036 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |