Genomic Location: Scaffold_270__1_contigs__length_127288:32923...33951
NR annotation: MCH8167537.1, pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [Pseudomonadota bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN31027-RA |
| Transcript |
| ANN31027-RA |
| Protein |
| ANN31027-RA |
| UniProt accession | Description |
|---|---|
| Q9R9N5 | Pyruvate dehydrogenase E1 component subunit alpha OS=Rhizobium meliloti (strain 1021) OX=266834 GN=pdhA PE=3 SV=1 |
| O66112 | Pyruvate dehydrogenase E1 component subunit alpha OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) OX=264203 GN=pdhA PE=3 SV=1 |
| Q92IS3 | Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) OX=272944 GN=pdhA PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004454 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00676 all species → | E1_dh | Dehydrogenase E1 component | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR029061 all species → | Homologous_superfamily | Thiamin diphosphate-binding fold | Interproscan |
| IPR001017 all species → | Domain | Dehydrogenase, E1 component | Interproscan |
| IPR017597 all species → | Family | Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y | Interproscan |
| IPR050642 all species → | Family | Pyruvate Dehydrogenase E1 Alpha Subunit | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11516 all species → | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016624 all species → | Molecular Function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor | Interproscan |
| GO:0004739 all species → | Molecular Function | pyruvate dehydrogenase (acetyl-transferring) activity | Interproscan |
| GO:0006086 all species → | Biological Process | acetyl-CoA biosynthetic process from pyruvate | Interproscan |
| GO:0043231 all species → | Cellular Component | intracellular membrane-bounded organelle | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00161 | PDHA, pdhA; pyruvate dehydrogenase E1 component subunit alpha | EC:1.2.4.1 | Diabetic cardiomyopathy | ko05415 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
