Gene detail

Detailed information of ANN31181-RA in Montipora grisea

Genomic Location: Scaffold_1468__1_contigs__length_54691:6163...8697
NR annotation: WP_123323948.1, GTPase HflX [Alteromonas oceani]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN31181-RA

ATGGGCCCGACCGCATCCGGCAAGACCGGATTGGCGCTGGAACTGGCCAGTCAGGTACCCGCTGAGATAATCAGTGTCGACTCGGCACTGGTTTATAAACACATGAATATAGGTACGGCCAAGCCGACCGCCGAGGAGATGGCCGTTGCGCCACACTGGCTGGTGGATATTATTGAGCCAACAGAGGCGTACTCTGTGGCGGACTTTGTGGCCGACACCACACGTCTGATCAGTGAAATACACGGCCGTGGAAAGCTGCCCATTCTGGTCGGCGGTACAATTATGTACTTTAATGCCTTGATAAATGGTATTTCGCCCCTACCTAAGTCTGACCCAGAGATTCGTGAAGCGATTCTCAGTGAAGCTAATGAGCGGGGCTGGCAGGCAATGCATGCCGACCTTGAAACGGTCGACCCGGTCAGTGCAGGGCGCATTCATCCGAATGATCCACAACGACTGACCAGGGCGCTGGAAGTTTATCGCAGTTCGGGGAAATCACTAACCCACTGGCAGCAAAAGGCAATTTATCGTTGCCCGTACAAGATTGACCAGTTTGCGATTGCACCACAGGAGCGAGCCGTGTTACATGATCGCATTGCACAAAGGTTTGATTTGATGTTAGCGCAAGGATTGGTGGACGAAGTGAAAGCGTTGTACGAACGCGGTGACCTTCATGAGGACATGCCAGCAATCCGGGCTGTGGGGTATCGTCAGGTATGGCAGTATCTTAAAGGCGAGTTAAGCTATGCAGAAATGCGTGATAAAGCCGGTGAACAGGCTATACTTGTTCATGTAAATTTTGCCGATGAAGACAGTCGTGAAGACTTGGCTGAGCTGGAATTACTGGTTTCATCGGCGGGCGTTAATGCTGTTGATGTACTAACCACGTCCCGGGGCGCCCCTCATCCAAAATACTTTGTTGGATCGGGGAAAGCCGAAGAGATCGCTGCTGCTGTGAAAGCCCATGAGGCCAATGTGGTGATCTTTAATCATGCCCTGTCTCCTTCACAGGAACGAAACCTCGAAGCAATCTGCAAGTGCCGGGTGATCGATCGCACCGGTCTTATTCTTGATATTTTTGCGCAGCGTGCCCGGACTCACGAGGGTAAGCTTCAGGTTGAATTAGCCCAGTTGCGGCATATATCCACGCGTTTGATTCGGGGCTGGACACACCTTGAGCGTCAAAAGGGCGGGATTGGCTTGCGCGGGCCGGGTGAAACCCAGCTCGAAACTGACCGTCGTTTATTGCGCGGTCGAATCAAGACGATTCTGCGCCGCCTGGAAAAGGTCGCCAAGCAACGGGAACAAGGCCGACGTTCGCGCAAGCGGGCAGAAATTCCCACCATGTCCCTGGTTGGCTATACCAACGCCGGTAAATCCACCCTTTTCAACCATATTACTGATGCCGATGTGTACGCGGCCGACCAGTTGTTTGCCACACTGGATCCGACCCTGCGTAAACTCGATCTTAAGGAAGTTGGCCCGGTGATTCTGGCCGATACGGTTGGTTTTATTCGTCATCTCCCCCATGATCTGGTAGCGGCCTTTAAAGCCACGTTGCAGGAAACCCAGGAAGCAGACCTGTTGCTGCATGTAGTGGATTATTCTGCCAACAACTATCTGGAAACCATGGACGAGGTGAACACGGTGCTCGATGAAATTGACGCCGGCGAAATTCAACAACTGATTATCTGCAATAAAATTGATCAGTTGGAGGAAGTTGAACCTAAAATTGATCGGGGCGAGGACGGCATGCCAATACGTGTGTGGCTGTCTGCGAAAACCGGTCAGGGCACTGAGCTGTTGTTCGAGGCAATTAATGATTGTCTGGCGCAGAGCATGGTAAGTTACACCCTGAAAATCCCTCCGGCACAGAGCCGTTTGCGCGGTGTTCTGTACGAATTGGATTGTATATCCGAACAATCCTACGATGCACAGGGGGACTGGGTGGTTGATGTGCGAATGCCGGCAGCCGATTGGAACCGGTTAGAAAAGCGTTTGGATCATGGTTTATCAGAGTTTGTCGTTAAACACTGA

Transcript

ANN31181-RA

Protein

Uniprot

Uniprot term	Description
P25519	GTPase HflX OS=Escherichia coli (strain K12) OX=83333 GN=hflX PE=1 SV=3
Q0I442	GTPase HflX OS=Histophilus somni (strain 129Pt) OX=205914 GN=hflX PE=3 SV=1
Q15NR1	tRNA dimethylallyltransferase OS=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) OX=3042615 GN=miaA PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16360	GTP-bdg_M	GTP-binding GTPase Middle Region	Family	Interproscan
PF01715	IPPT	IPP transferase	Domain	Interproscan
PF13167	GTP-bdg_N	GTP-binding GTPase N-terminal	Family	Interproscan
PF01926	MMR_HSR1	50S ribosome-binding GTPase	Family	Interproscan
PF19275	HflX_C	HflX C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006073	Domain	GTP binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR016496	Family	GTPase HflX	Interproscan
IPR030394	Domain	HflX-type guanine nucleotide-binding (G) domain	Interproscan
IPR018022	Family	IPP transferase	Interproscan
IPR032305	Domain	GTP-binding protein, middle domain	Interproscan
IPR025121	Domain	GTPase HflX, N-terminal	Interproscan
IPR035647	Homologous_superfamily	EF-G domain III/V-like	Interproscan
IPR045498	Domain	HflX, C-terminal domain	Interproscan
IPR042108	Homologous_superfamily	GTPase HflX, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10229	GTP-BINDING PROTEIN HFLX	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0043022	Molecular Function	ribosome binding	Interproscan
GO:0008033	Biological Process	tRNA processing	Interproscan
GO:0052381	Molecular Function	tRNA dimethylallyltransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03665	hflX; GTPase	-	Ribosome biogenesis	ko03009	deepkoala