Gene detail

Detailed information of ANN31304-RA in Montipora grisea

Genomic Location: Scaffold_3074__1_contigs__length_38342:16357...19236
NR annotation: WP_085125172.1, excinuclease ABC subunit UvrA [Tistlia consotensis]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN31304-RA

ATGCCCCTTCAAAAGGACGGCCCGTCCAGCAGTGATCCTGTCATCGAGGTCCGCGGCGCGCGCGAACATAATCTTCAAAACGTATCGGCCACGCTGCCTCGCAACAAGCTGGTGGTGATCACCGGTCTCTCTGGTTCAGGTAAGTCATCATTAGCTTTTGACACGATCTATGCGGAAGGTCAGAGGCGCTATGTCGAATCGCTCTCAGCCTATGCCCGGCAATTTTTGGAGCTGATGCAAAAGCCTGATGTGGACTCCATCGAAGGCTTGTCACCGGCTATTTCCATAGATCAGAAGACCACCTCTAAGAACCCGCGCTCGACCGTTGGGACAGTGACAGAGATCTATGACTATCTGCGGCTGCTCTATGCGCGCGTCGGTATTCCCTACTCCCCTGCAACGGGCTTGCCTATCGAAAGCCAGACCGTTAGCCAGATGGTCGACCGGGTGATGGAAATGCCCGAGAAGACACGGATTTACTTGCTGGCGCCTATCGTGCGAGGGCGCAAGGGTGAGTATCGCAAAGAGCTGCAAGATCTCCAAAAACGCGGATTCCAACGCGTGAAGGTCGATGGGACGATCTATGAAATTGAAGAGGTCCCAGCGCTCAATAAGAAGCTGAAACATGATATTGAGGTCGTGGTTGATCGCTTGGTGGTGCGTGAAGGCCTCGAGAGCCGCTTGGCGGATTCCTTTGAAACGGCTTTGAACCTGTCGGATGGCTTGGCCTTCACGGAAAATGCCGATGACGGCGAGCGCACAACCTTCTCAGCACGCTTTGCTTGCCCAGTTTCAGGTTTCACCATTGATGAGATCGAGCCGCGGCTGTTTTCCTTCAACAATCCTTTTGGCGCTTGTCCCGAGTGCGATGGATTGGGCCACAACGCCTTCGTCGATGCGGAATTGGTGACCCCTGACGATCACCTGAGCCTTTCAAAGGGCGCCATTGCGCCTTGGTCGGGCAGCAGTTCTAAATATTACGAGCAGACCCTGGAAAGCCTAGCGCGCCATTTCAAGGTGCCCATGACCAAGCCCTGGAAGGACCTACCCAAGAAGGTTCAAAAAGCCATTCTCTACGGCACCGATGGCGCGCCTGTCTTGATGCGCTTCGATGACGGTTTGCGCACCTATGAGACCGAAAAGGCTTTCGAGGGCGTGATCCCCAATATGGAGCGCCGCTGGCGGGAGACGGACAGCGATTGGGTGCGTGAGGAAATCGGCCGCTACCACTCTTTACAGCCCTGCAGCGCCTGTAATGGCCATCGCCTGAAGGACGAAGCCTTGGCCGTAAAAGTGCGCGATAAGCATATTGGCGAGGTCGCCCAGCTTTCCGTGTTAGAGGCCCGGGACTGGTTCTTAGAACTGGATCAGCATTTAAAGCCGCAGGCCCGGGAAATTGCCGTGCGGATCTTGAAGGAAATCAACGAGCGTTTGGGATTCTTAGTGGATGTCGGCCTTGAGTACCTGACCTTGAGCCGCGCCTCGGCCACTCTTTCCGGCGGCGAGAGTCAGCGCATCCGCCTGGCCTCGCAAATCGGATCTGGCTTGACCGGTGTGCTTTATGTGCTTGATGAGCCCTCGATCGGTTTGCATCAGCGCGATAACGCGCGGCTTCTGGAAACGCTGAAGCGCCTGCGCGACCTGGGGAATACCGTGATCGTGGTGGAACATGACGAGGATGCCATCCGCTCGGCCGATTACGTCATCGATATGGGGCCTGGCGCCGGGGTCCATGGCGGCCGTGTCGTTGCTGCTGGGCTGGAAAAAGAGATCGAACAATCACCTGAGAGTATTACCGGGCAATACTTGACAGGTCTTCGCCAGATTGAGGTGCCAGAGGTCCGCCGCAAGGGCCACAAGAAGCAGAAAGTGACCATCAAGGGAGCTAAGGGCAACAACCTGCACAATGTGAATGTCGAGATACCGCTTGGCACCTTCACCTGCGTGACGGGTGTCTCGGGGTCCGGCAAGTCCACTTTGATCATTGAAACGCTCTATAAGGCCCTCGCGCGGCGTTTGAATGGCAGCCGCGATCTGCCCAATGAGTTTAAATCCATCGAGGGTCTGGAGTTTCTCGACAAAATCATTGATATCGACCAATCCCCGATTGGTCGCACGCCACGCTCCAATCCGGCGACTTACACCGGCGCCTTCACGCCGATCCGCGATTGGTTCGCAGGTCTACCGGAGTCCAATTCCCGCGGCTACAAGCCCGGACGCTTTTCCTTCAACGTGAAGGGGGGGCGTTGTGAAGCCTGCCAAGGCGACGGCGTGATCAAGATCGAGATGCATTTTCTGCCCGATGTCTACGTGCAGTGCGATGTTTGTAAGGGCAAGCGCTACAATCGCGAGACCCTGGAGGTTACCTACAAGGGCAAGTCCATCGCAGATGTTCTCGCTATGACGGTCGAGGAAGGCGCGAAGTTCTTCAAGCCTGTCCCCTCGATCCGAACCAAAATGGAGACACTCGAAAAGGTCGGACTTGGCTATATCCAGATCGGCCAGCCGGCCACACAGCTCTCCGGGGGGGAGGCTCAACGCATCAAGCTGGCCCGTGAACTCTCCAAGCGCTCAACCGGCAAGACCATCTACATTCTCGATGAACCGACCACAGGGCTTCATTTTGAGGACGTGAAAAAGCTACTGGAAGTGCTGCACACCCTGGTGGAGCAAGGCAATACGGTCTTGGTCATCGAACATAATCTCGACGTCATCAAGACTGCGGATTGGTTAATCGATCTTGGACCGGAGGGCGGTGATGGCGGCGGCAAGATCATCGCCACGGGCACGCCTGAGGAAGTCGCCCAAGTCCCCGAGAGCTATACAGGCCAGTTCCTCGGTCCTTATTTGCCTTCGTCCCGGAAAAAGAAACGTGCCTGA

Transcript

ANN31304-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8G0I9	UvrABC system protein A OS=Brucella suis biovar 1 (strain 1330) OX=204722 GN=uvrA PE=3 SV=1
Q8YHC4	UvrABC system protein A OS=Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M) OX=224914 GN=uvrA PE=3 SV=1
Q89L46	UvrABC system protein A OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110) OX=224911 GN=uvrA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010724 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17755 all species →	UvrA_DNA-bind	UvrA DNA-binding domain	Domain	Interproscan
PF17760 all species →	UvrA_inter	UvrA interaction domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR017871 all species →	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR004602 all species →	Family	UvrABC system subunit A	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR041552 all species →	Domain	UvrA DNA-binding domain	Interproscan
IPR041102 all species →	Domain	UvrA, interaction domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43152 all species →	UVRABC SYSTEM PROTEIN A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006289 all species →	Biological Process	nucleotide-excision repair	Interproscan
GO:0009380 all species →	Cellular Component	excinuclease repair complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03701	uvrA; excinuclease ABC subunit A	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →