Genomic Location: Scaffold_3074__1_contigs__length_38342:33462...34737
NR annotation: WP_119165662.1, serine--tRNA ligase [Algihabitans albus]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN31308-RA |
| Transcript |
| ANN31308-RA |
| Protein |
| ANN31308-RA |
| UniProt accession | Description |
|---|---|
| B2S5B8 | Serine--tRNA ligase OS=Brucella abortus (strain S19) OX=430066 GN=serS PE=3 SV=1 |
| Q2YNM6 | Serine--tRNA ligase OS=Brucella abortus (strain 2308) OX=359391 GN=serS PE=3 SV=1 |
| Q57DM2 | Serine--tRNA ligase OS=Brucella abortus biovar 1 (strain 9-941) OX=262698 GN=serS PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003390 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00587 all species → | tRNA-synt_2b | tRNA synthetase class II core domain (G, H, P, S and T) | Domain | Interproscan |
| PF02403 all species → | Seryl_tRNA_N | Seryl-tRNA synthetase N-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR042103 all species → | Homologous_superfamily | Serine-tRNA synthetase, type1, N-terminal domain superfamily | Interproscan |
| IPR045864 all species → | Homologous_superfamily | Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) | Interproscan |
| IPR002317 all species → | Family | Serine-tRNA ligase, type1 | Interproscan |
| IPR010978 all species → | Homologous_superfamily | Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm | Interproscan |
| IPR006195 all species → | Domain | Aminoacyl-tRNA synthetase, class II | Interproscan |
| IPR002314 all species → | Domain | Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) | Interproscan |
| IPR033729 all species → | Domain | Serine-tRNA ligase catalytic core domain | Interproscan |
| IPR015866 all species → | Domain | Serine-tRNA synthetase, type1, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43697 all species → | SERYL-TRNA SYNTHETASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000166 all species → | Molecular Function | nucleotide binding | Interproscan |
| GO:0004828 all species → | Molecular Function | serine-tRNA ligase activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0006434 all species → | Biological Process | seryl-tRNA aminoacylation | Interproscan |
| GO:0004812 all species → | Molecular Function | aminoacyl-tRNA ligase activity | Interproscan |
| GO:0006418 all species → | Biological Process | tRNA aminoacylation for protein translation | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01875 | SARS, serS; seryl-tRNA synthetase | EC:6.1.1.11 | Transfer RNA biogenesis | ko03016 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
