Genomic Location: Scaffold_7223__1_contigs__length_25302:10693...11535
NR annotation: MXY19770.1, hydroxymethylbilane synthase [Dehalococcoidia bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN31509-RA |
| Transcript |
| ANN31509-RA |
| Protein |
| ANN31509-RA |
| UniProt accession | Description |
|---|---|
| Q65GK1 | Porphobilinogen deaminase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=hemC PE=3 SV=1 |
| Q2RJ26 | Porphobilinogen deaminase OS=Moorella thermoacetica (strain ATCC 39073 / JCM 9320) OX=264732 GN=hemC PE=3 SV=1 |
| A4IRG5 | Porphobilinogen deaminase OS=Geobacillus thermodenitrificans (strain NG80-2) OX=420246 GN=hemC PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004086 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03900 all species → | Porphobil_deamC | Porphobilinogen deaminase, C-terminal domain | Domain | Interproscan |
| PF01379 all species → | Porphobil_deam | Porphobilinogen deaminase, dipyromethane cofactor binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036803 all species → | Homologous_superfamily | Porphobilinogen deaminase, C-terminal domain superfamily | Interproscan |
| IPR022418 all species → | Domain | Porphobilinogen deaminase, C-terminal | Interproscan |
| IPR022419 all species → | Binding_site | Porphobilinogen deaminase, dipyrromethane cofactor binding site | Interproscan |
| IPR000860 all species → | Family | Porphobilinogen deaminase | Interproscan |
| IPR022417 all species → | Domain | Porphobilinogen deaminase, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11557 all species → | PORPHOBILINOGEN DEAMINASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004418 all species → | Molecular Function | hydroxymethylbilane synthase activity | Interproscan |
| GO:0033014 all species → | Biological Process | tetrapyrrole biosynthetic process | Interproscan |
| GO:0018160 all species → | Biological Process | peptidyl-pyrromethane cofactor linkage | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0006783 all species → | Biological Process | heme biosynthetic process | Interproscan |
ANN31509-RA.Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
