Gene detail

Detailed information of ANN31934-RA in Montipora grisea

Genomic Location: Scaffold_6882__1_contigs__length_26091:9167...10549
NR annotation: MCE2456347.1, class II fumarate hydratase [Dehalococcoidia bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q82ID7	Fumarate hydratase class II OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=fumC PE=3 SV=1
Q9FBN6	Fumarate hydratase class II OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) OX=100226 GN=fumC PE=3 SV=1
Q9HQ29	Fumarate hydratase class II OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) OX=64091 GN=fumC PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0233918 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10415 all species →	FumaraseC_C	Fumarase C C-terminus	Domain	Interproscan
PF00206 all species →	Lyase_1	Lyase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024083 all species →	Homologous_superfamily	Fumarase/histidase, N-terminal	Interproscan
IPR018951 all species →	Domain	Fumarase C, C-terminal	Interproscan
IPR000362 all species →	Family	Fumarate lyase family	Interproscan
IPR051546 all species →	Family	Class-II Aspartate Ammonia-Lyase	Interproscan
IPR020557 all species →	Conserved_site	Fumarate lyase, conserved site	Interproscan
IPR022761 all species →	Domain	Fumarate lyase, N-terminal	Interproscan
IPR008948 all species →	Homologous_superfamily	L-Aspartase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42696 all species →	ASPARTATE AMMONIA-LYASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006099 all species →	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0016829 all species →	Molecular Function	lyase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006531 all species →	Biological Process	aspartate metabolic process	Interproscan
GO:0008797 all species →	Molecular Function	aspartate ammonia-lyase activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01744	aspA; aspartate ammonia-lyase	EC:4.3.1.1	Alanine, aspartate and glutamate metabolism	ko00250	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.