Gene detail

Detailed information of ANN32059-RA in Montipora grisea

Genomic Location: Scaffold_4827__1_contigs__length_31022:2394...3059
NR annotation: RVD92252.1, DNA-directed RNA polymerases II and IV subunit 5A like [Tubulinosema ratisbonensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q9N5K2	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis elegans OX=6239 GN=rpb-5 PE=3 SV=1
A8XGH1	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis briggsae OX=6238 GN=rpb-5 PE=3 SV=1
Q80UW8	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus OX=10090 GN=Polr2e PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01191	RNA_pol_Rpb5_C	RNA polymerase Rpb5, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036710	Homologous_superfamily	RNA polymerase Rpb5, N-terminal domain superfamily	Interproscan
IPR014381	Family	DNA-directed RNA polymerase subunit Rpo5/Rpb5	Interproscan
IPR035913	Homologous_superfamily	RPB5-like RNA polymerase subunit superfamily	Interproscan
IPR000783	Domain	RNA polymerase, subunit H/Rpb5 C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10535	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003899	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0001054	Molecular Function	RNA polymerase I activity	Interproscan
GO:0001055	Molecular Function	RNA polymerase II activity	Interproscan
GO:0001056	Molecular Function	RNA polymerase III activity	Interproscan
GO:0005665	Cellular Component	RNA polymerase II, core complex	Interproscan
GO:0005666	Cellular Component	RNA polymerase III complex	Interproscan
GO:0005736	Cellular Component	RNA polymerase I complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03013	RPABC1, RPB5, POLR2E; DNA-directed RNA polymerases I, II, and III subunit RPABC1	-	DNA repair and recombination proteins	ko03400	deepkoala