Gene detail

Detailed information of ANN32191-RA in Montipora grisea

Genomic Location: Scaffold_8505__1_contigs__length_22370:3728...5077
NR annotation: MBX3506782.1, oxygen-independent coproporphyrinogen III oxidase [Parvibaculum sp.]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
O31381	Oxygen-independent coproporphyrinogen III oxidase OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110) OX=224911 GN=hemN PE=3 SV=2
P95651	Oxygen-independent coproporphyrinogen III oxidase OS=Cereibacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) OX=349102 GN=hemN PE=3 SV=2
P33770	Coproporphyrinogen III oxidase, anaerobic 1 OS=Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.) OX=272943 GN=hemN PE=3 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04055	Radical_SAM	Radical SAM superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006638	Domain	Elp3/MiaA/NifB-like, radical SAM core domain	Interproscan
IPR034505	Family	Anaerobic coproporphyrinogen-III oxidase	Interproscan
IPR007197	Domain	Radical SAM	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR004558	Family	Oxygen-independent coproporphyrinogen III oxidase HemN	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13932	COPROPORPHYRINIGEN III OXIDASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006779	Biological Process	porphyrin-containing compound biosynthetic process	Interproscan
GO:0006782	Biological Process	protoporphyrinogen IX biosynthetic process	Interproscan
GO:0051539	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan
GO:0051989	Molecular Function	coproporphyrinogen dehydrogenase activity	Interproscan
GO:0004109	Molecular Function	coproporphyrinogen oxidase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02495	hemN, hemZ; oxygen-independent coproporphyrinogen III oxidase	EC:1.3.98.3	Porphyrin metabolism	ko00860	deepkoala