Genomic Location: Scaffold_2779__1_contigs__length_40161:83...1684
NR annotation: MYG83184.1, tRNA epoxyqueuosine(34) reductase QueG [Candidatus Dadabacteria bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN32246-RA |
| Transcript |
| ANN32246-RA |
| Protein |
| ANN32246-RA |
| UniProt accession | Description |
|---|---|
| E6X4P3 | Epoxyqueuosine reductase OS=Cellulophaga algicola (strain DSM 14237 / IC166 / ACAM 630) OX=688270 GN=queG PE=3 SV=1 |
| E4RUV9 | Epoxyqueuosine reductase OS=Leadbetterella byssophila (strain DSM 17132 / JCM 16389 / KACC 11308 / NBRC 106382 / 4M15) OX=649349 GN=queG PE=3 SV=1 |
| Q9HUL4 | Epoxyqueuosine reductase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=queG PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0016348 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08331 all species → | QueG_DUF1730 | Epoxyqueuosine reductase QueG, DUF1730 | Family | Interproscan |
| PF13484 all species → | Fer4_16 | 4Fe-4S double cluster binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR017896 all species → | Domain | 4Fe-4S ferredoxin-type, iron-sulphur binding domain | Interproscan |
| IPR004453 all species → | Family | Epoxyqueuosine reductase QueG | Interproscan |
| IPR013542 all species → | Domain | Epoxyqueuosine reductase QueG, DUF1730 | Interproscan |
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR011989 all species → | Homologous_superfamily | Armadillo-like helical | Interproscan |
| IPR017900 all species → | Conserved_site | 4Fe-4S ferredoxin, iron-sulphur binding, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR30002 all species → | EPOXYQUEUOSINE REDUCTASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008033 all species → | Biological Process | tRNA processing | Interproscan |
| GO:0008616 all species → | Biological Process | queuosine biosynthetic process | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0052693 all species → | Molecular Function | epoxyqueuosine reductase activity | Interproscan |
ANN32246-RA.Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
