Gene detail

Detailed information of ANN32328-RA in Leptoseris scabra

Genomic Location: Scaffold_11__1_contigs__length_41608735:12955839...12995701
NR annotation: CAH3164845.1, unnamed protein product, partial [Porites evermanni]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN32328-RA

ATGGCTTCGCAGAAGATGAAAGAGGAATTGGCGCGGCAATCCGGCTTCGAGGATATATCTTTTGCTACAAGAAGCTATCGTCCAGAATATGCTTCGACACCAGACATACGAGGGACTTTTAGACCGCAAAGATGGATTCGAACTTCTGAGATCGAACCTACACTGCGAGCGAAGCTTGCATTTACATCAGGGGGTAAAGACCGCCAGGGCCGAAGTATCTTAACTATACCAGCTGGAAAGACCGAAGATTTGAGCGTGGATCAACTTGGAGATACACTTGTCTATTTAACCCAGATTCCAAGGGACCAAACAAGAAGCCAGATATACACTGTGATAATTGATTTACGTGGTTCTTCCTGGAAATCTGCTAAGCCTCTGCTCAGGACATTACAGGACACTGTGCCTGATAGAGTACATGATGTGTATATTATAAAGCCAGATGCATTTTGGGAAAAAAGACGCACAGGAACTGGACTCAAAAAAGAACAATCCAGTGTTGTTTTTGAGACAACACTATTGTCATCAACTAGTAAACTTCACCAGTTTGCTGAAGACAGTCAACTCACTCAGGAACTTGGTGGTACATTACCATATGACCACCACAGATGGATTGACACCAGATTGGAAATTGATAGGCTGTCAGATGAAGCTGTCTCCTTGAATGAGAAGCTTGATGAACTGGAACAAGATCTTGATACCCACCGTCTAGGGAGCAACCTTGAAGAGACGGACGACCTCATACAACAGCATGAAGCTAAAAGAGCAGTTCTTGATAATGATGCGCAGCCACTTATCCAGAGAGGGGAACGCTTAATAAGCTCTCTAAAAGCAAATGAACCTCCCATTCCACCAAGCCAGAATTTTCCCGGGAGTATGGCATCCCTGCCAAGTCAAGAGCGCCAACAGGTTGAGGGCATTGTTACACTCCTGACGCACAGGTGCAATCAGCTGATGGACATGTGGGAAAAGAGATGGAAAGAATTGATGCAGTGTATGGATCTTCGACAGTTTGAAGCAGGTTATCAGAAGGTGATTGACTGGGTTCTCGGGCCAGGAGAACGTTATTTATCCACGTCGAAAGACATCGGAGACTCTGTCATAACCTGTGAGGTTTTAAGAAAAGAACATGAAGAATTTGAGATGAATGCAAGAGATGTTATTAACCACTTCGCTCAGGTGCGAGAGCTGGCCAAGAAGATGCTTCAAGAGAATCACTACGCGTCAAAAGACATCAAAACCCAGAAGGAATTTCTGGACAGAGGCTGTCGGAGCTTTGCCATGCGCATGAACAGGAGGAGAGATGTTATTCTGACGTCACTGAAGTTCCACAAGAGTGCTGGAGATTGCTCCGTTCACTTAGACGACTTGTTTGAACTGCTGTGTTCTGATTCTGTTCTCTTGTACGACTACGAAACTGCAGAGACCATGCTCAGAACACTGGAAGAGAAGGCTGAAGCCGTTGCTGTGTCGTCCGAGGAAACTTTGCGAGACGCGCTGGCCGCGCAGGAACTGATGACCAGTCAGGTTGTTGACATGCGCGGCGATGATGTCACACCGGACTACAGTAGGGGTATTGCGCATGTGCGGCTGACGCTGGACGAACTCAGAGAGCGGAAGCTGCGTACGGACGAGCTGTGCGATGTGCGCAGAATCAAACTACAACAACTGCTGCAGCTCAGACAAAGCGAACGAGACGCAGAACAGGCAACAGCATGGATAAGCCAGCTGCGAGACGCTACAGAACACAACCTGGGGGATGTTGGACGGAACTCCGAGGACGTCGAGGCACTTCAACAAGAACACGAGAAACTGGAGGGCACTGCTAGGAGCACTTATGATTATGGAAGACAGTTTCTTCAAGCTTCGTTAGTTCTTCGCCGGACATGTCGCTACGAATTGTCACCGAACTACGAAATGGAAGAAAAGTTGAATAGCGCATGGGGCGACTTCTCGTCCGCCATGGCAGAGCGAGGGGCAAGGTTATCTGTGGCTCTCATGTTCCATCGGAGTGCGGAGAAGTTGACCCAACGAATAGAGGAGCTTAGGGCTGCATACATACGCGAGGACCTCCCAGAAGACCTCACGGCCGTGGAACAAGAAATCAGTCGACACTCTGACACCAGACATGCGATCGACAAAGAATACGCCGAGACGGTTGCCATGGCGAAAGCTTTGATTGACAGGATGCAATTGCCTTCTCTCTATGACGAGGATGGAGAGCCGAATCGCCCGCCTCATCTCTTAGAAGAAAGTCTGATGGATTTGGAAGAAAGAAAGACAGCTTGGGAGAGAGTGTGGAAGGATAGAGACGAGAGACTTCATCACTGGTTGAAACTTGGAGACTACGAACAACAAATGAACGAGCTTCTCCAGTGGGTGAAAGACAGAACGAACGAGACAGAGGAGAACAAGAACGAGATTGGTGAAAACCTGGCCGAGGCCGAGGCGCTGTCTTCTGACCTTCAGGAACTGGAAACGAGGCTCAAGGACAAAGAGAAAGAAGTTGCTGAGCTGATTCAGGTGATTAAGTCGCTAACCCCGACTGAAGAAGACAGAGCAAGGCCTTATGGAAGGATGGCAGATTCATTAGAAGAGGCCTGGAATGACCTCAATGTACAATTAGAGGGCAGGAGAATACTATTGGACACTTCTTTGGCCTTTCATCAAAGTGTTGAGCAGTTCTCTGACAAAATTGATTCAACACAAGATGAAATCAGCAGGGTCCTTTTGGCAGAAGATGTCACCTCATCATCGTCATTACTCCACCAACATCAAGAGCTAAGAAAAAGTGTCCTGGAATTATCGATGCAGACTTTATCCAAAGGACAGGCACTCCTAGACAGATTACGCGAGGCAAGCACGCATGCAGACATAAACAACCAGCATGCGACCAAAGCAGCATGTTACAGTGTTGAACGTATTCTAGAAGCTCTGCATCATCGACGGCAACAGCTTGATGAGCAATGGAGGGAGAGGAAAAAGGTTCTAGAACAGTGTATCAAGAGATGCAAGATTGATGAAGAAATACAAAAGATCACCAAGTGGCTGAATGAAGATGCAGAGGATTATCTGAGCTACAAAGAATATGGAGACTCTGCAGCCTCAACTCAAGTCCTGCTTGATGAACATGCCAAGTTTGAAGAAGCAGCCAAGGAAAAGGAGGAGGCTGGACATAGACTGGCACGAGAAACAGAAAAACTTGTGCATGGCGACTTTGCTGACATGCAAGACACACAAGTCAAGATAACCCAGCTTCAGACAAACTTGCAGTTATTGAAACAACGCGTGGATGAAAGAAAGAAGCTACTATTGGAGACGTTAGCCTATTACAAAAATAACAGACGAGCTCTAAATAAACTTAATGAAATTGGTGATAAAATGACAGAAGAGAAGCTGACAGTTGAAGATCAGAAGGAGCTTTATGGAGCAATTTACGCAGCCACGGCAACACAGCTGCGAGGCGGAAAGATGTTACAGGAGAAAATGGCAGATGTCAAACAAAAACCAGTGGTGGTGAGAATGTATGAAGAACTGCAAGAAAAAAGCACAGCTCTGCTTGTCAATGTGGAACCAGATCCTTCTACAAAGGAGATTGAAGATGTGTACAACTGGATAAGGAATGTGGGAGAAGACTTTCTGGTTAACAATACAGTGATGGGTGATTCTGTGAAAACATCACAAGAGTTCTTGTATTCGCACAAAGAACTTGACTCAGAAAAGGAGAGTAATTTAATAATTGGCACATGGCACCAAAAGTTTCTTTCCAAAAACAAAAGTTGTGCACACCCACCTGATGACCATGTTGTCATATCATCTCCTTAG

Transcript

ANN32328-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q80UK0	SEC14 domain and spectrin repeat-containing protein 1 OS=Mus musculus OX=10090 GN=Sestd1 PE=1 SV=1
Q86VW0	SEC14 domain and spectrin repeat-containing protein 1 OS=Homo sapiens OX=9606 GN=SESTD1 PE=1 SV=2
Q5M7P4	SEC14 domain and spectrin repeat-containing protein 1 OS=Xenopus tropicalis OX=8364 GN=sestd1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001183 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00435 all species →	Spectrin	Spectrin repeat	Domain	Interproscan
PF13716 all species →	CRAL_TRIO_2	Divergent CRAL/TRIO domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018159 all species →	Repeat	Spectrin/alpha-actinin	Interproscan
IPR002017 all species →	Repeat	Spectrin repeat	Interproscan
IPR001251 all species →	Domain	CRAL-TRIO lipid binding domain	Interproscan
IPR036865 all species →	Homologous_superfamily	CRAL-TRIO lipid binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46607 all species →	SEC14 DOMAIN AND SPECTRIN REPEAT-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005546 all species →	Molecular Function	phosphatidylinositol-4,5-bisphosphate binding	Interproscan
GO:0010314 all species →	Molecular Function	phosphatidylinositol-5-phosphate binding	Interproscan
GO:0032266 all species →	Molecular Function	phosphatidylinositol-3-phosphate binding	Interproscan
GO:0043325 all species →	Molecular Function	phosphatidylinositol-3,4-bisphosphate binding	Interproscan
GO:0070273 all species →	Molecular Function	phosphatidylinositol-4-phosphate binding	Interproscan
GO:0080025 all species →	Molecular Function	phosphatidylinositol-3,5-bisphosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN32328-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.