Gene detail

Detailed information of ANN32358-RA in Leptoseris scabra

Genomic Location: Scaffold_11__1_contigs__length_41608735:13721096...13766706
NR annotation: CAH3184034.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN32358-RA

ATGAGGATCGCTGGATGGAAGCAAGACTCGACCAGCCTTCGCGTTTCGGTGGTTATTTCCATTTATATTTTGTTCTGGGGAATTCGTGATACTACATCACAGCGGTCGTCACTTCTCAAACGCTTGAAACGTGTTCCAGACAGCAGTCTCTCAGATATCGATTTGCTTGGGACGATAGGAGAGCCACTTCCGGTTGGAGTTTCCTTCACAAAAGGACCCCACACGAAGCCTGCCTTTAACTTCCGGTCAATTGCGAATGTGGGTCGATTTGCACGTTACATTTTTCCCAGGAATTTCTTCGTCGAATTCTCCATAACTGTCGCAATTCGACCAAAACGCGTCGAACGTGGTGTCGTGTTTGCTATTCTACCAAATTATCGACGAGGAAATGCAATTCTGGGACTGGAGATTCAAAGTGTCGCCGAGGGCACTACAATCAGATTAACTCATGCAAGTGATACGAGAACCAAAACTGTTTTTGACTTCCAAGTGCCTGATATTTCCAATAAATGGACGTGGATAGGATTTAGCATAAAAAGAGATGGCGTTACTTTTTATTTGAACTGTGACGAAGCTGAGACCAAGTTTCGACTGTCGACCCTTGGTGAACTTACCCTACCCTCTTACAGTGCATTGTACATTGGCAGAGCAGGTTGGACACCAGAGGCAGGATTAAGCGCCTTTGAGGGCGATATAGCAGAGCTGGCCATACACAGGGACCCCAGGCAGCCCCAAAGGCAGGAGTGTAAGGCAGATAACAGTTCCAACCACAACAGGTGTGCCCACCACACCCAAGAAAACAACAACGACGGAAACGACGACAAAAGCGACAACAACAACAACACCAACAACGACAGAAACGACAACAAAAGCGACAACAACAACAACAACAACAACAACACCACCAACAACGACAGCACGGCGTATGACAACGGAACTTCTTCCAGACAGACACCCACATCACCAAAAGAAGATTCAGATATTTCTGGTGTGGACGCAGCAAAAGTGCGAACGGCAACAGTGTCGCCAGAACTAACTGAGCCAAATGTTGAAGAAGAACTTGGATCAACCAAAGTTGTGTCAACAGCAGACAGCAGTACAGAAGTGACATCAGAAGCGATAACTACTACGGACGATACTGATTTAGTCACCACACAACCAGCAACCAGCGAAAAAAATATTTGGGATAGCGATTCAACTACAGAACTGCCAAAATTGATAGAAACTACTATGTCCAACACCAATGCACCAGATAGCTTAGCAGCTACTGAAATTAGCGGAGTAACAACAACAACTTCCAGCGGTACTGAAGTAAATGGTGAAGGAAGATCTGCTTCACCCGATTCAACAACTGCAGAACTTCCACTAGTGGAGGAATCTACGACTCCCTACACACAAGTACCAGAGAGCACTGCAACCGCTGGAGACGTCGACGTAGCAACAACAACAATGGCAAGCGATACAAAAGTAGAACCCATAGTGACAATTGCTGTTGATAATACAGCAGCCACTGAACAGCCAAGGATGGTAGAGATAACGAGTGAGAGAATTTCCGTTCCAACTGCCTCACCAAAGGATGCCTCGACAACAGAGAGTTCTGAAGACACTTCATTAGCAAGCAGTGCAGTTACATCCGAACATCCGTCTGGAGACGCATCGTCAACAAGTGGGGCAGTTACAATTGAAGGCACATCCACAAGTACAACCGTTACAACTCAACTTCCATCAGCAGTAACAACAGATCTTCCATCCAAAGATATTTCATCAACAAGTGAAGCAACTGAAACAGAAATTCCATCAAAAGAGACTCCATCAACAAGTACACCATTTACAACAGTAATTCTTTCTAACGACGCTTCATCAACAACTGAAACAGTCACAGCAGAACTGCCAACCGAAGATAACTCAGTAACAAGTGCGGCAATTACAACAGGCGATACTTCATCGATAAGTAGCGTTGTTACAACAGAAAGCCCAACAAGAGATAGTTTATTAACAAGTACAACTTTTACAAGTGAAATTCCAACTGAACACACTTCTTCAACAAGTATAGCAGCTACAACGGACCTTCGAACTAAAGATACCTTATCGGCAAGTGCAGCAGTGACAACAGAACTTCCAACAGAAGATACTTCATCAACAAGGGCACCAGTTACAACAGAAAGTGCAACTGAAAACACTCCATCGACAAGAGAAGGAGTTACATCAGAACTTCCATCGGAAGATAGTTCATCAACAAGCACAGCAGGGACATCGCAGGATCCAACTGATCATACTTCTTCGATAATTTCACCAGTAACGACAGAACTTCGAACTGAAGATACTACATCAACAAGTGCACCAGTTACAACGAAAGTTTCAACTGAAGAAACCTCATCAACAAGTACAGCAGTTACAACAGAAATTTCAACTGAAGATACTTCCTCAGCAGGTGCCCCAGTTACAAGAAACCTTCCAACTCAGGAAACTTCATCAACGAGTAAAGCAGGCACGACAGAGCTTCCACATGTAGAAAAGTTATCCACACGTACAGCAGTTGCAACAGAAATGCCATCCAAAGACACTTCATCAACAAGAAAAGCAATTTCAACAGAACGTCCGTTTTTCTCAACAACTACAGCAGATACAACGTCACATGAGACGACTGACTCCCAGAAGCGTACTACAGACAGTATTCTTTCGTCTTCTACTCTATCAAGGGATAGGAAAGAACTCTCAACAGCTTTCAGCTCGGTTTCATCATCCAGTTCGCCTACGGCAGCAAGCACAACGTCTAGTCCAGTAATCAGTACATCGAGTAGGCCTAAAGACGATGCTAGTTCAAAGCATTCTACCTCATTCCTTGTTTCAATAACTATAGCACGTGACATAGGAGATGAAGTTGACCCTACCGATGATACAGAGGCAATTATTGCAAGAATTGAAGGAGAATCCGAGGAGAATTCTACCAAAGAATCATCTGTTGATATCACAGACACCACTCCCAAGGTCCTTTCTTCTGTTCAAAGTGCTGAAGCCACAACGGTGAATCCTGAAGCATTGGCGACAACGTCTAGCACGGCGCAAAGTACAGGTGCCCGCACTGCGGGACCAAACGAGATCCCAGATCTTAGAGGACGCCCAGGATCTCCGGGACCTAAGGGCGACAAGGGAGACTCTATTGTTGGTCCTCGGGGAGCAGTGGGATATCCTGGATACCCTGGTCGTAAAGGAGTAAAAGGAAGCAAAGGTGACCCTGGTAACAGTGGATCTAAGGGCGAGCGAGGCAGACAGGGTCCTCAAGGTCCGGCAATATACTTTAAATCTGGCGAAGCGATTATAAGCATTAAAGGAGAGAAGGGTGAACCAGGACCAGCCTATACATTCGTGCGAGAAATCAACTGTACAAAGGGGAAATGTGGCCAGTATATTCAAGGTCCTAAAGGTGCAGCCGGAAAAAATGGTCTTCCGGGAGTTACCGGCCCCGCGGGATTGCCCGGTCCTCCGGGTGCACCGGGCGAACCCGGAGTGCTGCTCGATCCTGAAACAGGACTGCCTGTCGATCCTCCAAAAGGCGATAAAGGAGAAATAGGAATGAATGGTTTCAATGGAAGCAAGGGTGAACCTGGACAAAAGGGACAGCGAGGAATTGTTGGTCTTCCTGGGCAAAAGGGTGACCGTGGAAGCGTTGGACTGCCCGGTGCTCCTGGCAAGGGTGGTTCACCGGGAAAAATGGGACTTCCGGGTGTGGGTTTACGTGGTCCTACAGGATTCCCTGGAAAAAAGGGCGTTAGGGGATCAACCGGCGTAAAGGGACAAATGGGAGACAGAGGTATTCAAGGGCCAAAAGGAAACGATGGTACAATGGGAAACATGGGATTCCCAGGACCACGAGGACGAAAGGGCGCAAAGGGTGACAGTGTTCCAGGTCCACCAGGTCCCCCGGGTCCTCCAGGACCTAAAGGTGGTGCATCACCTAAGAAAGGTGACCGGGGTGTTCCTGGCCCCCCTGGTCCTCCTGGGCCACCTGGAAACATAAGCAATGTGGCTGGACTCGGTGGAAAAGGGGAGGCTGGGCAGAAAGGACAGAAAGGCGATTCGGCAGGACTAAAAGGAGAAAAAGGAGCAAGGGGATTCAATGGAACGAAAGGCGACACCGGATCAATTGGACCGCGTGGACCTGTTGGACCCCGAGGTCCACCAGGCCTGCCGAGTAACAACGTAACTTTTGGAGAGCCTGGACCTAGAGGACAACCAGGAGTTGACGGAATTCCTGGGATACCGGGAGAGCCTGGGCCTAAAGGAGAAAAGGGTACTGGAGGTTCAATAGGACTTCCTGGTCTAAAAGGAAAACCAGGCAAAAAGGGTGAAATGGGGCCACAGGGACCCGATGGGCAGACAGGAGAAAAAGGCCCAAAAGGAGCACAGGGTTCACTTGGAGACAATGGACAAAAGGGAGAAAAGGGCGACCAAGGCATCGGCGTCAAAGGAGAACCGGGCAATAAAGGGGAAACTGGTCTGCAAGGCCCGCCCGGACCTCCCGGTGAGGTACCTCCTTTAGATCCCATGAAGGGAGAAAAAGGTGACACAGGAGACGCTGGTTTTCCCGGACGAAGGGGTGTTCCCGGAAAACAAGGTCAAGCTGGATTTCCCGGTATGAAGGGCGAAAAAGGTGATCAAGGTCCTGTGGGTCAGGGTGATCCGGGACCTATCGGACCCGCGGGACAGAAGGGCGAAACGGGATCGAAAGGGGATCAGGGAGTTTCTGGTGTTGGATTTCCAGGTTCAAAAGGAATGAAAGGCGCCAAGGGCGATACCGGAGACAAAGGATCAGACGGACGAAAGGGCGACCCAGGCCAAGGTATCCCAGGACCACCTGGGCCCCCAGGTCCTCCAGGAGCAATAACGGAAGCTGGAGGCGGAGAGTCATCAGCACAGGTCAATGCACAAAAAGGCGACAAGGGCGATCGTGGTCTCCCAGGAATGAAAGGAGAAAACGGAACAACAGGAGCAAATGGCATCAAAGGTGAAAAGGGAGAGGAGGGACCCGCGGGACCGAGAGGCGATACGGGATTCCCTGGATTTAGAGGACAACCTGGAGTCAAGGGAGAAGATGGAGTCGATGGAAAAGATGGGCCTCAGGGACCAATGGGACCCCCCGGAAGTCGCGGAGAAATTGGACCCCAGGGACCAGTTGGATTTCCAGGTCTTAAAGGTAGAGGGGGGCGTCCTGGTCCGCCCGGACCTCCCGGTCCACCGGGATTTCCGGGAGAGAAGGGTGAGCCTGGTGAAGAAGCGGACATTGGATCATTTGAAGGAGAGAACGGAAACGGAAAGGCGGTGAAAGGAGAAAAGGGAGAGCGAGGGACAAACGGAACTTCTGGAATCAAAGGCGAAAAGGGAGAGAAAGGAATTGGCGAGAAGGGTCAAAAAGGAGATTTGGGAATTAAGGGAGAGTTTGGAGAAAGTGGTGAGAAAGGAGAGGCCGGCTCTCCAGGAACACTGGGTCCTGAAGGTCCAAAAGGTCCCGAGGGACCTCAGGGACTGATGGGACCTCCAGGGTTCCCTGGAGAGTATGGGCCTAAAGGATCGAAAGGCGAAACGGGAGAACCAGGGGAGAGGGGAGGGCAAGGAGAGCCTGGAGCGCCTGGGAAAGATGGAGTGAATGGAACGAATGGCAGTAAGGGCGGACCAGGTGATGTCGGTTTTCCTGGAGAGAAGGGCCAATCAGGAGCAAAGGGAGAACCTGGAGAAATAGGTCCTCAAGGGCCAAAGGGAGAACCGGGATTACAAACCACGGGACCAATTGGGCCTCAAGGGAAGCCAGGATCCCCGGGAGATCCGGGACCTCCGGGACCGCCCGGTCCACCAGGCAAACTCCCGGGACCTCCGGGTCCCCCGGGTAGAGATAGCAACGTCCCCGGTCCTCCAGGACCACCCGGACCTCCGGGTCTCCCAGGAAAGAATGGAAAAAATGGTGATACACAGCAGAAAGATGACCCAGGGATGAATCCATTAACTCCTTCAGTTGTCGTATTCGACTCTCAAGAAGCACTTATCAAAGCAGTTGAGAAGGTGAAACCAGGTACCCTAGCCTTTGTGATTTCGGATCAGCTGCTATACGTCAGAACCAGTGGTGGCTGGAAAACTGTAGTGCTTGGTCCAACCGTGTTCGCGGCTCCGACAAAAGCTCCTATAACAACAAGACTCAGCACCACTATGACTTCGAACGGAATCACTTTACCTCCAGTTAACGTCAAGCTCAAAGGACAGTATTTGCGCATGGTGGCCCTTAATTTACCGCAGACTGGTTTGATGAGGAGTGTCAGGGGCGCCGATGAAAAATGCTGGCGTCAAGCTCGTAAGGCGAACCTGACTGGAACATACAGAGCATTTATCTCCAACAGGTATCAACATGTTTACACAATCGTTCATCGAGAGGACAGAAATCTTCCTGTTGGAAATCTTAAGGGCGATCAGTTGTTTCCTTCTTGGAATTCTATCTTCACTAAACGATACGCTTTTAATCCTGATATTCCAATCTATTCATTCAATGGATCAAATGTACTCACGAGTTCAACTTGGCCTTTCAAACACATATGGCACGGCTCGCAACAATCTGGCGAGAGGCACCCAAAAAACTGCAGAAGCTGGTTGAGCAAGAGTTCCGAGCAATTCAGTACGGCAACGGCTTTGAATGGTCGCTCTCCGACATTGGACGAACGGGAGTTTCCGTGCAGCAGTAGTCTAATTGTTTTATGCGTGCAGGTAAACCCTACCCAACGGCGACGAAGACTCAGAGCAGCACACAATGTTTTATGA

Transcript

ANN32358-RA

Protein

ANN32358-RA

MRIAGWKQDSTSLRVSVVISIYILFWGIRDTTSQRSSLLKRLKRVPDSSLSDIDLLGTIGEPLPVGVSFTKGPHTKPAFNFRSIANVGRFARYIFPRNFFVEFSITVAIRPKRVERGVVFAILPNYRRGNAILGLEIQSVAEGTTIRLTHASDTRTKTVFDFQVPDISNKWTWIGFSIKRDGVTFYLNCDEAETKFRLSTLGELTLPSYSALYIGRAGWTPEAGLSAFEGDIAELAIHRDPRQPQRQECKADNSSNHNRCAHHTQENNNDGNDDKSDNNNNTNNDRNDNKSDNNNNNNNNTTNNDSTAYDNGTSSRQTPTSPKEDSDISGVDAAKVRTATVSPELTEPNVEEELGSTKVVSTADSSTEVTSEAITTTDDTDLVTTQPATSEKNIWDSDSTTELPKLIETTMSNTNAPDSLAATEISGVTTTTSSGTEVNGEGRSASPDSTTAELPLVEESTTPYTQVPESTATAGDVDVATTTMASDTKVEPIVTIAVDNTAATEQPRMVEITSERISVPTASPKDASTTESSEDTSLASSAVTSEHPSGDASSTSGAVTIEGTSTSTTVTTQLPSAVTTDLPSKDISSTSEATETEIPSKETPSTSTPFTTVILSNDASSTTETVTAELPTEDNSVTSAAITTGDTSSISSVVTTESPTRDSLLTSTTFTSEIPTEHTSSTSIAATTDLRTKDTLSASAAVTTELPTEDTSSTRAPVTTESATENTPSTREGVTSELPSEDSSSTSTAGTSQDPTDHTSSIISPVTTELRTEDTTSTSAPVTTKVSTEETSSTSTAVTTEISTEDTSSAGAPVTRNLPTQETSSTSKAGTTELPHVEKLSTRTAVATEMPSKDTSSTRKAISTERPFFSTTTADTTSHETTDSQKRTTDSILSSSTLSRDRKELSTAFSSVSSSSSPTAASTTSSPVISTSSRPKDDASSKHSTSFLVSITIARDIGDEVDPTDDTEAIIARIEGESEENSTKESSVDITDTTPKVLSSVQSAEATTVNPEALATTSSTAQSTGARTAGPNEIPDLRGRPGSPGPKGDKGDSIVGPRGAVGYPGYPGRKGVKGSKGDPGNSGSKGERGRQGPQGPAIYFKSGEAIISIKGEKGEPGPAYTFVREINCTKGKCGQYIQGPKGAAGKNGLPGVTGPAGLPGPPGAPGEPGVLLDPETGLPVDPPKGDKGEIGMNGFNGSKGEPGQKGQRGIVGLPGQKGDRGSVGLPGAPGKGGSPGKMGLPGVGLRGPTGFPGKKGVRGSTGVKGQMGDRGIQGPKGNDGTMGNMGFPGPRGRKGAKGDSVPGPPGPPGPPGPKGGASPKKGDRGVPGPPGPPGPPGNISNVAGLGGKGEAGQKGQKGDSAGLKGEKGARGFNGTKGDTGSIGPRGPVGPRGPPGLPSNNVTFGEPGPRGQPGVDGIPGIPGEPGPKGEKGTGGSIGLPGLKGKPGKKGEMGPQGPDGQTGEKGPKGAQGSLGDNGQKGEKGDQGIGVKGEPGNKGETGLQGPPGPPGEVPPLDPMKGEKGDTGDAGFPGRRGVPGKQGQAGFPGMKGEKGDQGPVGQGDPGPIGPAGQKGETGSKGDQGVSGVGFPGSKGMKGAKGDTGDKGSDGRKGDPGQGIPGPPGPPGPPGAITEAGGGESSAQVNAQKGDKGDRGLPGMKGENGTTGANGIKGEKGEEGPAGPRGDTGFPGFRGQPGVKGEDGVDGKDGPQGPMGPPGSRGEIGPQGPVGFPGLKGRGGRPGPPGPPGPPGFPGEKGEPGEEADIGSFEGENGNGKAVKGEKGERGTNGTSGIKGEKGEKGIGEKGQKGDLGIKGEFGESGEKGEAGSPGTLGPEGPKGPEGPQGLMGPPGFPGEYGPKGSKGETGEPGERGGQGEPGAPGKDGVNGTNGSKGGPGDVGFPGEKGQSGAKGEPGEIGPQGPKGEPGLQTTGPIGPQGKPGSPGDPGPPGPPGPPGKLPGPPGPPGRDSNVPGPPGPPGPPGLPGKNGKNGDTQQKDDPGMNPLTPSVVVFDSQEALIKAVEKVKPGTLAFVISDQLLYVRTSGGWKTVVLGPTVFAAPTKAPITTRLSTTMTSNGITLPPVNVKLKGQYLRMVALNLPQTGLMRSVRGADEKCWRQARKANLTGTYRAFISNRYQHVYTIVHREDRNLPVGNLKGDQLFPSWNSIFTKRYAFNPDIPIYSFNGSNVLTSSTWPFKHIWHGSQQSGERHPKNCRSWLSKSSEQFSTATALNGRSPTLDEREFPCSSSLIVLCVQVNPTQRRRRLRAAHNVL

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P39059	Collagen alpha-1(XV) chain OS=Homo sapiens OX=9606 GN=COL15A1 PE=1 SV=2
O35206	Collagen alpha-1(XV) chain OS=Mus musculus OX=10090 GN=Col15a1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002240 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01391 all species →	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF20010 all species →	Collagen_trimer	Collagen trimerization domain	Domain	Interproscan
PF06482 all species →	Endostatin	Collagenase NC10 and Endostatin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008160 all species →	Repeat	Collagen triple helix repeat	Interproscan
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan
IPR050938 all species →	Family	Collagen and Collagen-like Structural Proteins	Interproscan
IPR048287 all species →	Domain	Thrombospondin-like, N-terminal domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR016186 all species →	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR045463 all species →	Domain	Collagen type XV/XVIII, trimerization domain	Interproscan
IPR010515 all species →	Domain	Collagenase NC10/endostatin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37456 all species →	SI:CH211-266K2.1	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for ANN32358-RA in Leptoseris scabra.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN32358-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Leptoseris scabra tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Leptoseris scabra, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →