Gene detail

Detailed information of ANN32452-RA in Leptoseris scabra

Genomic Location: Scaffold_11__1_contigs__length_41608735:15754113...15769005
NR annotation: CAH3183870.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN32452-RA

ATGTCAGTTGACTGGGACGCTGATGCTTTACGGAAATACGTCGATGAAAACAACTCTAAGGACGAGCAACCCTTGGATTTTCAATTAGAAAGTCATCGAAAGAATTTCATCAGAAAGGCATCAAGATATCACGTGCTCGATGTTAATGGAACAAAATTCTTGTCAAAATTAGAAAAGGGAGAGAAAGTTGCCGTTGGTGGCAAATCTGTCTTTGTCAAAAAACGTGTTATTTGTCTTGACGAGTACGATAGACTTTTGCAGGACCATCACGACAAAAAGAACCATTTAGGTTACGTAAAATGTTATTACGAGATGAGACAAATTTATTCTAAAGTCAGTTCCAGTATCTTGCGTCAGTATATCAGCAATTGCCAGTGGTGTCGAACACATAAGACTATTCTAGCCAAGCAAGTTCATAACAGACCAATATGTGTGTATGGTGTTTTCGAAAGGTTGGGTATCGACCTAACGGAGTACACAGACAGTCGTGATCAGCGAAATGAAAAGCACATCTTATTGCTTATGGAAGATTATTTTTCACGTTTTGCGTGGGCCAAGATTCTCCCAAATTCTACTGGAGAAGAAATAGCTTTTCAGTTGTATGACCTATGCTTAGGCTTAGGATTGGTGCCAAATGCAATCCAGTCAGATAACGGAAGACAGTTCGTGGGACAAGTCGTAAGGAGTCTGATGAAGAAATTTGAAGTGGAAGTCAAATTGGCCAAGCCTCGAAGTCCTTGGACAGGTGGACGATTTGAACGAGTAATCCAGTCGCTAAAGCAGATGCTGGCAGCAAAACTGGATGAATTCCCGGACTATTCGGTAGAGTTGGCCCTTAAGATATGTCTATTTGACTACAACACCCGTAGGCACGAGGCGTTGTCGTCCTTTGGGCAAAGTCTTGCGCCTGTTGATGTTTGGACCGCTGGTAATCGTCAAAGAAGATTACAGCAGAAGATCAACATGGACTTTCGTGACCTCACCGCCGAGGACGAAGAAGAAGAAGAAGCAATAGCTGTAGATGAAGACGACGGTCCTGATTTCACAGAGGAAAGTGTTGGCCTGTTATTCAGTGACGCGGATACCGTAAGAGTTCAGGCTACAAAGGGATCTATGATAGCTGAGGGCAGTATCATCACCTCAGGGAAGGATAAAACACTGCTCGTATCTGTTGGTGACATCGGCCTCATTGAAATACCAAAGGAGGACAGGCCAAAATACGGACAGAGAAATCTACTTGTGCAAGTAATGTCCATGGACAGTGAAGACCAGCTTGTACTAGCACCCGTACTAGAAACTGGTGTCGGACCAAACTTATCTATTCGGTTTTCCCGGCGAGATTTCGTAAAAGCTGTGGAAAGCAATAACATCGTCAGCCAGGATCTCTTGCAGTCGTCCATTTCGTCACCTTCAGAAGCATGTACGGAACTATTTCACTGGATAAAGGAAGTAGTTGGACACTGTCTTGCAAAGACAGAAGACGGGGAGCAAAAAGAATGTATCCTGGCTGTTGCATTGCTCGTTCTGCAAGCTGCCAAGGAAAACCGAAGGGATCTGGATATCGACAGTTGCCGTTCACTTCATCCGTCCTGCAAAGGGTTCCTTTCTGAACTGAAAATTCCGGCCATTCCCAGGATCAGAGGACTTCAAGAGGAGCTCTGTGACAGGCTCGTTCCCAGGATTATCTTTGCGCATCTCATGAAACAGAAAACCGACAGTAGGCTTTCACAGCTGTCTAAATTTTGGAAGCCACAAAACCAACATGGTCATTGCAGCGTTTGCCATCGTGCTGTCATGATGTGGATTAGATGGAAGTGCAAAGCTTGTGACAATCTTGTATGCTATGAGTGCTACAATGCCATTCTGTGTGATGTTATCAAGCACCCGTGCAACAATGATGCAGACAATGTAGCCAAGGACAATTTTGAGCAAGAATACCTACCATTCAGACGGGGTGATTCGTCAAGTAATGTGACATCGGAAGACCAAGAAAAGCTTGGAGCAAACTGTGACACAACAAATGGTTTTAAGAACGCAGTTCACACAATGGAAGGAGAAACCTCAAAGGACAAAGTCTCCACCAACAGGTCTGACAGCAAAAAAAGTGAACTGAGTTTAAGAGGTGCTGTTCAGCTCCAGTCGATGACTGGAAAGAAATCGACTAGCCGGACGACTGGAGGACCTTGCAGCTGCCACAAGAGTAAACCATGTAACAGTTTCAAGTGCCGTTGTAGACAAGCAAATCAACCGTGCACAGTTGACTGCAAGTGCTTCAACCACATTTGCTTCTTTAATAAATACCTGGAGAGACAGAAAACATCTACGGATTCCCAGAAGTCGGCGAAAGAGGAAGAGGAAAGTGTACAGGCAATATCAACAGGCTTTATTAACATTGGAAGCAACTGTTATATGAACTGTCTGTTCTCGGTATTACAACATGTCAGCTTTATAGAGGAGCTGAAAAGGAAATACGCGTTAGACGCTATACCTGCGGACTGTGTCACGATGAGAGCAACTGCTAAGATGTTTGATATTGCTTCCAATACTCACACCAAGAAATTCGTGAAAGAAGAATATGAATGCAGTGTGTCAGAGCTTTTGACTTCTATTGATTGGGACAAGAGTGATCGAGGAGTCGGGTGGTGGAATGACACGATGGAATTTTACCAGGCTTTGTTAGAAAAGCTTGAGTTAGAAATGGAGAATGGAGACATCCAGCGACGAACGTTAAGATATAGACGCTTTGCCAGTGTCCTTGCTTTGTGCCTGAACCGGACAGGAGATTCAAGAGCCGAAGTGCAAGTACCGCTGACTGTTGCAGAATTTTGTTTTTCGAATCCCGGGGAGTTGATACCCATACAAGGAACTTCTGGGAAGAATTTAGTGCTGTGGGGAGCAATAACTTACGAACAAGGACACTACACCAGTCTTGTGAGGACTACAGGAACATCGAATGAATGTTTGAAAGATGTCCTTTTCTACGCGCCTGAAGACAAATTAGGAGAAGTTGTTATCCTCCCTGGACAACAAATTGATTCCAGTACTATCAGACCAGCTGAGAATCTGCAGGAACATGCTTCAAAAACCAAGCGGAGAAAGGTTGGCAAAAGGAGAAATCAACAGAAGAGATCCGATAATGCTGTGTCCAAGAAAAGAACTAAACGAATGTTAAGCGACTCAGAGGATAGTGAAAGGAGAGAGCCCTTTGTGAGGCATTCTACCCCAGTTCCTTACCCTGACGATCCTGACCAACAAAACGTGTCAGACGACACGGAGGTTAAATTCGGTCCTCATCTATCAACGGACTACTCTCACGCGTATGATGATACCATCAGTGACTGCAATAGGTCGGAATCAAAGAAAAGAAAACTGCCCTCAACTGGTGTCAAAAAGAAACGAGCACTGAGTAAAGAGGAAAGGGGAAAGCTGTTTAAACAGAAGTTTCTGAGAAATCCTTCCCCGGAGACATTTGATTCTTCCGACGATGACTTTGCTACGAAAAAGGATAATCCAAAAGGAAGGCAGGTAAACTTGGCAGAGAAAGTCTCTGAACGGTTGGAGGAAATAGTAGGTATGGCCACACTAAAAGAGCAGATCCTAAAGTGGACGAAAAGTGTCCTTTTGGATAGGAAGAGAGCAGAATCTGCTGGCGAAAATGGCAAAGGAAAGTTAAATCCACCTATATACCATATGGTTCTTATGGGAAATCCTGGAACTGGGAAAACAACGATAGCAAGATTGATGGCAGGTATCCTCAAAGATGTTGGCATAACAAAAAAAGCAAAGCTCATCGAAGTGCAGCGGCCTGATCTCGTTGGAAGATATCTGGGGGAAACAGCGGTTCAAACCAAGGCGTGTATTGAGCGAGCTAAGAATGGGGTATTGTTTGTAGACGAGGCGTACAGACTTAAAGTAGATTCAGAGAAGGACTACGGGAAAGAGGCTTTGGACACCTTAATGGAATCGATGCTCGGGGGAAATCCGGTCATGATCTTTGCCGGCTACCCAGCAGAAATGGAGGACTTCCTCAAGTTAAACCCGGGATTTAAGCGCAGGATACGATCCATTTTCTGCTTCGAAGACTACACATGCGAAGAACTTGCTGAAGTTTTCAAGCGAAAGCTCGAGACGCATGGCTTCAAAACCGATGTGTCAGAAGAGGAGCTATCAGAAGTTATTGCCGAGAATACCACACAAGACTTGAGAAAGGGGTGGAACGCAGGACTCTGTGATAGATTGTTTGAACTGTCAAAGGAAAATATGGATGGGAGATTGATATCGAATTCTTTTGGCGTGATCGCAGATGGATGTGACTTAAGAACGATTTCTAGGGAAGACATAAATAAGGCGATCGACTCAATTCATTAA

Transcript

ANN32452-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P27643	Stage V sporulation protein K OS=Bacillus subtilis (strain 168) OX=224308 GN=spoVK PE=2 SV=3
P95648	Protein CbbX OS=Cereibacter sphaeroides OX=1063 GN=cbbX PE=1 SV=1
P9WPH8	ESX-1 secretion system protein EccA1 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=eccA1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001687 (this species only)
Ubiquitin family	DUB\|USP\|USP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF00443 all species →	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000641 all species →	Family	CbxX/CfxQ	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR050773 all species →	Family	CbxX/CfxQ RuBisCO activation and ESX secretion	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR001394 all species →	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43392 all species →	AAA-TYPE ATPASE FAMILY PROTEIN / ANKYRIN REPEAT FAMILY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN32452-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.