Gene detail

Detailed information of ANN32452-RA in Leptoseris scabra

Genomic Location: Scaffold_11__1_contigs__length_41608735:15754113...15769005
NR annotation: CAH3183870.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN32452-RA

ATGTCAGTTGACTGGGACGCTGATGCTTTACGGAAATACGTCGATGAAAACAACTCTAAGGACGAGCAACCCTTGGATTTTCAATTAGAAAGTCATCGAAAGAATTTCATCAGAAAGGCATCAAGATATCACGTGCTCGATGTTAATGGAACAAAATTCTTGTCAAAATTAGAAAAGGGAGAGAAAGTTGCCGTTGGTGGCAAATCTGTCTTTGTCAAAAAACGTGTTATTTGTCTTGACGAGTACGATAGACTTTTGCAGGACCATCACGACAAAAAGAACCATTTAGGTTACGTAAAATGTTATTACGAGATGAGACAAATTTATTCTAAAGTCAGTTCCAGTATCTTGCGTCAGTATATCAGCAATTGCCAGTGGTGTCGAACACATAAGACTATTCTAGCCAAGCAAGTTCATAACAGACCAATATGTGTGTATGGTGTTTTCGAAAGGTTGGGTATCGACCTAACGGAGTACACAGACAGTCGTGATCAGCGAAATGAAAAGCACATCTTATTGCTTATGGAAGATTATTTTTCACGTTTTGCGTGGGCCAAGATTCTCCCAAATTCTACTGGAGAAGAAATAGCTTTTCAGTTGTATGACCTATGCTTAGGCTTAGGATTGGTGCCAAATGCAATCCAGTCAGATAACGGAAGACAGTTCGTGGGACAAGTCGTAAGGAGTCTGATGAAGAAATTTGAAGTGGAAGTCAAATTGGCCAAGCCTCGAAGTCCTTGGACAGGTGGACGATTTGAACGAGTAATCCAGTCGCTAAAGCAGATGCTGGCAGCAAAACTGGATGAATTCCCGGACTATTCGGTAGAGTTGGCCCTTAAGATATGTCTATTTGACTACAACACCCGTAGGCACGAGGCGTTGTCGTCCTTTGGGCAAAGTCTTGCGCCTGTTGATGTTTGGACCGCTGGTAATCGTCAAAGAAGATTACAGCAGAAGATCAACATGGACTTTCGTGACCTCACCGCCGAGGACGAAGAAGAAGAAGAAGCAATAGCTGTAGATGAAGACGACGGTCCTGATTTCACAGAGGAAAGTGTTGGCCTGTTATTCAGTGACGCGGATACCGTAAGAGTTCAGGCTACAAAGGGATCTATGATAGCTGAGGGCAGTATCATCACCTCAGGGAAGGATAAAACACTGCTCGTATCTGTTGGTGACATCGGCCTCATTGAAATACCAAAGGAGGACAGGCCAAAATACGGACAGAGAAATCTACTTGTGCAAGTAATGTCCATGGACAGTGAAGACCAGCTTGTACTAGCACCCGTACTAGAAACTGGTGTCGGACCAAACTTATCTATTCGGTTTTCCCGGCGAGATTTCGTAAAAGCTGTGGAAAGCAATAACATCGTCAGCCAGGATCTCTTGCAGTCGTCCATTTCGTCACCTTCAGAAGCATGTACGGAACTATTTCACTGGATAAAGGAAGTAGTTGGACACTGTCTTGCAAAGACAGAAGACGGGGAGCAAAAAGAATGTATCCTGGCTGTTGCATTGCTCGTTCTGCAAGCTGCCAAGGAAAACCGAAGGGATCTGGATATCGACAGTTGCCGTTCACTTCATCCGTCCTGCAAAGGGTTCCTTTCTGAACTGAAAATTCCGGCCATTCCCAGGATCAGAGGACTTCAAGAGGAGCTCTGTGACAGGCTCGTTCCCAGGATTATCTTTGCGCATCTCATGAAACAGAAAACCGACAGTAGGCTTTCACAGCTGTCTAAATTTTGGAAGCCACAAAACCAACATGGTCATTGCAGCGTTTGCCATCGTGCTGTCATGATGTGGATTAGATGGAAGTGCAAAGCTTGTGACAATCTTGTATGCTATGAGTGCTACAATGCCATTCTGTGTGATGTTATCAAGCACCCGTGCAACAATGATGCAGACAATGTAGCCAAGGACAATTTTGAGCAAGAATACCTACCATTCAGACGGGGTGATTCGTCAAGTAATGTGACATCGGAAGACCAAGAAAAGCTTGGAGCAAACTGTGACACAACAAATGGTTTTAAGAACGCAGTTCACACAATGGAAGGAGAAACCTCAAAGGACAAAGTCTCCACCAACAGGTCTGACAGCAAAAAAAGTGAACTGAGTTTAAGAGGTGCTGTTCAGCTCCAGTCGATGACTGGAAAGAAATCGACTAGCCGGACGACTGGAGGACCTTGCAGCTGCCACAAGAGTAAACCATGTAACAGTTTCAAGTGCCGTTGTAGACAAGCAAATCAACCGTGCACAGTTGACTGCAAGTGCTTCAACCACATTTGCTTCTTTAATAAATACCTGGAGAGACAGAAAACATCTACGGATTCCCAGAAGTCGGCGAAAGAGGAAGAGGAAAGTGTACAGGCAATATCAACAGGCTTTATTAACATTGGAAGCAACTGTTATATGAACTGTCTGTTCTCGGTATTACAACATGTCAGCTTTATAGAGGAGCTGAAAAGGAAATACGCGTTAGACGCTATACCTGCGGACTGTGTCACGATGAGAGCAACTGCTAAGATGTTTGATATTGCTTCCAATACTCACACCAAGAAATTCGTGAAAGAAGAATATGAATGCAGTGTGTCAGAGCTTTTGACTTCTATTGATTGGGACAAGAGTGATCGAGGAGTCGGGTGGTGGAATGACACGATGGAATTTTACCAGGCTTTGTTAGAAAAGCTTGAGTTAGAAATGGAGAATGGAGACATCCAGCGACGAACGTTAAGATATAGACGCTTTGCCAGTGTCCTTGCTTTGTGCCTGAACCGGACAGGAGATTCAAGAGCCGAAGTGCAAGTACCGCTGACTGTTGCAGAATTTTGTTTTTCGAATCCCGGGGAGTTGATACCCATACAAGGAACTTCTGGGAAGAATTTAGTGCTGTGGGGAGCAATAACTTACGAACAAGGACACTACACCAGTCTTGTGAGGACTACAGGAACATCGAATGAATGTTTGAAAGATGTCCTTTTCTACGCGCCTGAAGACAAATTAGGAGAAGTTGTTATCCTCCCTGGACAACAAATTGATTCCAGTACTATCAGACCAGCTGAGAATCTGCAGGAACATGCTTCAAAAACCAAGCGGAGAAAGGTTGGCAAAAGGAGAAATCAACAGAAGAGATCCGATAATGCTGTGTCCAAGAAAAGAACTAAACGAATGTTAAGCGACTCAGAGGATAGTGAAAGGAGAGAGCCCTTTGTGAGGCATTCTACCCCAGTTCCTTACCCTGACGATCCTGACCAACAAAACGTGTCAGACGACACGGAGGTTAAATTCGGTCCTCATCTATCAACGGACTACTCTCACGCGTATGATGATACCATCAGTGACTGCAATAGGTCGGAATCAAAGAAAAGAAAACTGCCCTCAACTGGTGTCAAAAAGAAACGAGCACTGAGTAAAGAGGAAAGGGGAAAGCTGTTTAAACAGAAGTTTCTGAGAAATCCTTCCCCGGAGACATTTGATTCTTCCGACGATGACTTTGCTACGAAAAAGGATAATCCAAAAGGAAGGCAGGTAAACTTGGCAGAGAAAGTCTCTGAACGGTTGGAGGAAATAGTAGGTATGGCCACACTAAAAGAGCAGATCCTAAAGTGGACGAAAAGTGTCCTTTTGGATAGGAAGAGAGCAGAATCTGCTGGCGAAAATGGCAAAGGAAAGTTAAATCCACCTATATACCATATGGTTCTTATGGGAAATCCTGGAACTGGGAAAACAACGATAGCAAGATTGATGGCAGGTATCCTCAAAGATGTTGGCATAACAAAAAAAGCAAAGCTCATCGAAGTGCAGCGGCCTGATCTCGTTGGAAGATATCTGGGGGAAACAGCGGTTCAAACCAAGGCGTGTATTGAGCGAGCTAAGAATGGGGTATTGTTTGTAGACGAGGCGTACAGACTTAAAGTAGATTCAGAGAAGGACTACGGGAAAGAGGCTTTGGACACCTTAATGGAATCGATGCTCGGGGGAAATCCGGTCATGATCTTTGCCGGCTACCCAGCAGAAATGGAGGACTTCCTCAAGTTAAACCCGGGATTTAAGCGCAGGATACGATCCATTTTCTGCTTCGAAGACTACACATGCGAAGAACTTGCTGAAGTTTTCAAGCGAAAGCTCGAGACGCATGGCTTCAAAACCGATGTGTCAGAAGAGGAGCTATCAGAAGTTATTGCCGAGAATACCACACAAGACTTGAGAAAGGGGTGGAACGCAGGACTCTGTGATAGATTGTTTGAACTGTCAAAGGAAAATATGGATGGGAGATTGATATCGAATTCTTTTGGCGTGATCGCAGATGGATGTGACTTAAGAACGATTTCTAGGGAAGACATAAATAAGGCGATCGACTCAATTCATTAA

Transcript

ANN32452-RA

Protein

Uniprot

Gene family

Uniprot term	Description
P27643	Stage V sporulation protein K OS=Bacillus subtilis (strain 168) OX=224308 GN=spoVK PE=2 SV=3
P95648	Protein CbbX OS=Cereibacter sphaeroides OX=1063 GN=cbbX PE=1 SV=1
P9WPH8	ESX-1 secretion system protein EccA1 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=eccA1 PE=3 SV=1

Gene family	Subfamily
Ubiquitin Family	DUB\|USP\|USP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF00443	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000641	Family	CbxX/CfxQ	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR050773	Family	CbxX/CfxQ RuBisCO activation and ESX secretion	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR001394	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43392	AAA-TYPE ATPASE FAMILY PROTEIN / ANKYRIN REPEAT FAMILY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579	Biological Process	protein deubiquitination	Interproscan