Detailed information of ANN32533-RA in Montipora grisea

Genomic Location: Scaffold_2147__1_contigs__length_45424:35926...37319
NR annotation: WP_283628842.1, tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB, partial [Alteromonas macleodii]
Species Montipora grisea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
B4S0R8tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase OS=Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype) OX=1774373 GN=miaB PE=3 SV=1
Q15TR4tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase OS=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) OX=3042615 GN=miaB PE=3 SV=1
Q47Y80tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) OX=167879 GN=miaB PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0012304 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04055
all species →		Radical_SAMRadical SAM superfamilyDomainInterproscan
PF00919
all species →		UPF0004Uncharacterized protein family UPF0004FamilyInterproscan
PF01938
all species →		TRAMTRAM domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007197
all species →		DomainRadical SAMInterproscan
IPR006463
all species →		FamilytRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaBInterproscan
IPR005839
all species →		FamilyMethylthiotransferaseInterproscan
IPR013848
all species →		DomainMethylthiotransferase, N-terminalInterproscan
IPR020612
all species →		Conserved_siteMethylthiotransferase, conserved siteInterproscan
IPR002792
all species →		DomainTRAM domainInterproscan
IPR023404
all species →		Homologous_superfamilyRadical SAM, alpha/beta horseshoeInterproscan
IPR006638
all species →		DomainElp3/MiaA/NifB-like, radical SAM core domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43020
all species →		CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003824
all species →		Molecular Functioncatalytic activityInterproscan
GO:0051536
all species →		Molecular Functioniron-sulfur cluster bindingInterproscan
GO:0035596
all species →		Molecular Functionmethylthiotransferase activityInterproscan
GO:0035600
all species →		Biological ProcesstRNA methylthiolationInterproscan
GO:0051539
all species →		Molecular Function4 iron, 4 sulfur cluster bindingInterproscan
GO:0006400
all species →		Biological ProcesstRNA modificationInterproscan
GO:0016740
all species →		Molecular Functiontransferase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K06168miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthaseEC:2.8.4.3
Transfer RNA biogenesisko03016deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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