Detailed information of ANN32534-RA in Leptoseris scabra

Genomic Location: Scaffold_11__1_contigs__length_41608735:18093728...18094811
NR annotation: KAJ7390303.1, collagen [Desmophyllum pertusum]
Species Leptoseris scabra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P08122Collagen alpha-2(IV) chain OS=Mus musculus OX=10090 GN=Col4a2 PE=1 SV=4
Q14031Collagen alpha-6(IV) chain OS=Homo sapiens OX=9606 GN=COL4A6 PE=1 SV=3
Q7SIB3Collagen alpha-2(IV) chain (Fragment) OS=Bos taurus OX=9913 GN=COL4A2 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0096462 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01413
all species →		C4C-terminal tandem repeated domain in type 4 procollagenDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR016187
all species →		Homologous_superfamilyC-type lectin foldInterproscan
IPR001442
all species →		DomainCollagen IV, non-collagenousInterproscan
IPR036954
all species →		Homologous_superfamilyCollagen IV, non-collagenous domain superfamilyInterproscan

 PANTHER
No PANTHER signature was detected for ANN32534-RA. This gene does have a gene model — the search simply returned no hit.
 Gene Ontology
GO termCategoryDescriptionSource
GO:0005201
all species →		Molecular Functionextracellular matrix structural constituentInterproscan
GO:0005581
all species →		Cellular Componentcollagen trimerInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ANN32534-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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