Gene detail

Detailed information of ANN32535-RA in Leptoseris scabra

Genomic Location: Scaffold_11__1_contigs__length_41608735:18144384...18166396
NR annotation: KAJ7380440.1, Centromere/kinetochore protein zw10 [Desmophyllum pertusum]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN32535-RA

ATGGCGGACGAGATGGAAAAAGAGGAAATTTCTAAAATTCGTAAGCCAAGCGCGAGTTTGGTCACCGATGTACTCCTTAAGTCTGGTCGTTTGGAGAAAGAAGACATAAATTCATGCGTGAAGAAGACATTGCAAAAAGCCGAAGAAGTGAAGGCAAGAGTTCACTTTTTTCTTTTGTTTCACCATACTATTCGGACACTCAAAAAAATATCGTACACTAGAAAAGCAGAGGTCCTTCAAGTGATTTACAAGGAGTACACTTTTGATGAATTTGTAGATTTCAGTAATTCAACCTTCGAAATGAACTGGAAAGTTAATAACCTTCTCACTGAAATACAGAACCTCTCTGGGAGACTGAAGAACTCAGTTGAAGGATCTCTTGATGCTGCTGCTCGTCAACATGGTGACCTTGTGAGACAATTAAAAGAGGCTGATGCAATTGCTGAGCTACTTGAAAGGCTTTATAAGATACATGAGGCACTAGATGCTTTTCCAGCTGAACTCAACAAGGCAGCTTATAGCAATGCGGCTAAACTTGTGCAAGATGTGAAGGAACTGCTCTCAAATTTACCCAAGGCTGGACAGGAAGGAAAGATATTTGTATCTCTCAGGGATGAATGGCGACGACAAAAAGCTCAGCTTATAGCAACACTAGAAAGAATATGGGCCAAGAGTGTTGCTTGGACTACACTAGCTACTGCATCGCTGGATAACAGACAAGGCCATCTCAGTACAGAACTCAAACTCAATACAGGTGGTTGTTCAATGAGTAATGTTCTGCAAGCAATGCAAATTCTTGGCATCGTGGACAAACTATTAAGATCTTTTGGAAAGAAACTGGTTCAGTTTATCTTCCGACCTGTTATTCTATTTCCCAGCCTTAAACCACAGGTTAGCCACAAGAATCAGGAGGTCATTGTATCATTTTCAAAGGAAAGTGGAAAAAAGGTCATAGATCCTGGACCATTATACTCAAAGTGTTGCGAGATCCTCGCTGTTTTACGAAACTTTTTTGATGGGACAAGTATTAAGGAAGAGAATGATACGTCAAGGGATGTTGATGTGTCAAGTGCAGCTCTGTTTGCTAAACTTGTAACAATATTGAAAGAATACCATGATAATGATATCTTCCACATAGGTGAATTTGTGTGGCCTGTTCTGTCTGAAAATATCATCACTGAGTGCCTCAAGAAATCTGTTCCTAAGACAAGTGCACAGTTGGAAAAATATCAAGATGTCATCAAAGCTACTGAAGAGTTTGAGGCAAAGCTTGTTTCTATAGGTTTAATTCCAGAAGGAACTAAAGACCTGACTTGTTATGTGAAAGACGTTGGTATTCACTTTGGTAACAAGAAGTGTCAAGATCTCCTTGTTGCTGCCCGTGACTTGATGAAAGATGACATACATAACACTGTTCAAGTGGACAATAGCACGGACAGAGCAGTTCTTGTCAGCTTAGGAGATATAGAGAAAGCAATGCAAGGCAAGAAAGGGACAAAGCATGAACCACTGCAGAAAGATGCTGGAAACACCTTGACCAAGTTCACATTTTGCCTCCCAGCTTGCCGAATTAGTGAAAGCACAGAGAAGTTGATGACTCTTGCTTACAAAACTCTCATAGAAGCAACACAGTCCAACCCACAAACTGCTATTCAGCTGTTCTACACCGTGCGTAATATGTTTGAGTTGTACTGTAATGTTGTCCCAACATATCACCAGCAACGCTTGGTTACATTACCCCAGTTGGCAGCATTGCACCATAACAACTGTATGTATATTGCCCACCATCTCCTCACACTTGGACATCAGTTCAGGCCCAAACTACCTGAACCTCTTAATCAGGGAGTTGCTTCATTTGTGGATTTGGTGCCAGTCATCAGACAAATGGGCGAGAAATGCTTCCTTGAACAGTTGAAAAAGCAACAATCGAATTTGTTGGAGCTAGTGAAGAACACAGAAGGCTTTGCTAATGTTCATGAGGATACAAAAGGATTGCAAGTTGAAAAAACAATGAAGCAGATTCTCCATCTTTTAACTTATCTTGGCAAAGTATGGAATGGTATTTTACCAATAAACATTTACTGTCAGTCTCTGGGAGCTTTATTTGATGATGTCCTTCAACGCATAACGTGGGAAGTTCTACAACTTGAGGATATCTCATCCGAGGAAGCTCACCAGCTGCACTCATTGCTCTCTATACTTGTCCAAAGAGGATCAGAGATATTTCAAAGCACTCAGGAAACAGATTCAGTTTCAGATGAATGTAGTTGGGACATATGCACTGTTGTACCCCATTGGAGTCGCTATAAGGAGTTGATCGGCATCTTAGAAGCCAGTTTACAAGACATTGTGGATCGTTGGGCAGATGGAAAGGGTCCACTGGCACATGAATGTTCAGCTCAAGAAGTTAGAGGTCTCATCCGTGCTCTCTTTCAAAACACTGACAGGAGAGCAGCAGTGTTGGGAAAGATCAAAGCTGTACAGGGATAG

Transcript

ANN32535-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O43264	Centromere/kinetochore protein zw10 homolog OS=Homo sapiens OX=9606 GN=ZW10 PE=1 SV=3
Q5RFM4	Centromere/kinetochore protein zw10 homolog OS=Pongo abelii OX=9601 GN=ZW10 PE=2 SV=3
Q4V8C2	Centromere/kinetochore protein zw10 homolog OS=Rattus norvegicus OX=10116 GN=Zw10 PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005484 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20665 all species →	Zw10_middle	Centromere/kinetochore protein zw10, middle domain	Repeat	Interproscan
PF06248 all species →	Zw10_N	Centromere/kinetochore Zw10 N-terminal	Repeat	Interproscan
PF20666 all species →	ZW10_C	Centromere/kinetochore protein zw10, C-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046362 all species →	Homologous_superfamily	Zw10/DSL1, C-terminal	Interproscan
IPR048344 all species →	Domain	Centromere/kinetochore protein zw10, middle domain	Interproscan
IPR009361 all species →	Domain	Centromere/kinetochore protein zw10, N-terminal	Interproscan
IPR048343 all species →	Domain	Centromere/kinetochore protein zw10, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12205 all species →	CENTROMERE/KINETOCHORE PROTEIN ZW10	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000278 all species →	Biological Process	mitotic cell cycle	Interproscan
GO:0000775 all species →	Cellular Component	chromosome, centromeric region	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0007094 all species →	Biological Process	mitotic spindle assembly checkpoint signaling	Interproscan
GO:1990423 all species →	Cellular Component	RZZ complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11578	ZW10, DSL1; protein transport protein DSL1/ZW10	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.