Genomic Location: Scaffold_1145__1_contigs__length_61047:51628...53475
NR annotation: MBA3954519.1, glutamine--fructose-6-phosphate transaminase (isomerizing) [Candidatus Dependentiae bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN32546-RA |
| Transcript |
| ANN32546-RA |
| Protein |
| ANN32546-RA |
| UniProt accession | Description |
|---|---|
| Q97MN6 | Glutamine--fructose-6-phosphate aminotransferase [isomerizing] OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W) OX=272562 GN=glmS PE=3 SV=3 |
| Q890U2 | Glutamine--fructose-6-phosphate aminotransferase [isomerizing] OS=Clostridium tetani (strain Massachusetts / E88) OX=212717 GN=glmS PE=3 SV=2 |
| Q74GH6 | Glutamine--fructose-6-phosphate aminotransferase [isomerizing] OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) OX=243231 GN=glmS PE=3 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002156 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01380 all species → | SIS | SIS domain | Domain | Interproscan |
| PF13522 all species → | GATase_6 | Glutamine amidotransferase domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR017932 all species → | Domain | Glutamine amidotransferase type 2 domain | Interproscan |
| IPR001347 all species → | Domain | SIS domain | Interproscan |
| IPR005855 all species → | Family | Glucosamine-fructose-6-phosphate aminotransferase, isomerising | Interproscan |
| IPR029055 all species → | Homologous_superfamily | Nucleophile aminohydrolases, N-terminal | Interproscan |
| IPR035490 all species → | Domain | GlmS/FrlB, SIS domain 2 | Interproscan |
| IPR047084 all species → | Domain | Glucosamine-fructose-6-phosphate aminotransferase, isomerising, N-terminal domain | Interproscan |
| IPR046348 all species → | Homologous_superfamily | SIS domain superfamily | Interproscan |
| IPR035466 all species → | Domain | GlmS/AgaS, SIS domain 1 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10937 all species → | GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0097367 all species → | Molecular Function | carbohydrate derivative binding | Interproscan |
| GO:1901135 all species → | Biological Process | carbohydrate derivative metabolic process | Interproscan |
| GO:0004360 all species → | Molecular Function | glutamine-fructose-6-phosphate transaminase (isomerizing) activity | Interproscan |
| GO:1901137 all species → | Biological Process | carbohydrate derivative biosynthetic process | Interproscan |
| GO:0006002 all species → | Biological Process | fructose 6-phosphate metabolic process | Interproscan |
| GO:0006047 all species → | Biological Process | UDP-N-acetylglucosamine metabolic process | Interproscan |
| GO:0006487 all species → | Biological Process | protein N-linked glycosylation | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00820 | glmS, GFPT; glutamine---fructose-6-phosphate transaminase (isomerizing) | EC:2.6.1.16 | Peptidases and inhibitors | ko01002 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
