Gene detail

Detailed information of ANN32662-RA in Leptoseris scabra

Genomic Location: Scaffold_11__1_contigs__length_41608735:21331481...21337037
NR annotation: CAH3196252.1, unnamed protein product, partial [Porites evermanni]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN32662-RA

ATGAATTATGGAAGCATCAACAATAACTGGCATGGGGTCTATTTAAGAGGAAGGTGCGTTCATATGATTACAAAGTCAACACGGCTGAAGACCTGGCGAAACTTTATCTTGAACCACATATGGCCAAGTTTACAGGTGCGTGCAAATGATTACAAAGTCAACACGTGCCCAAGATTTGATAACACCTGTGACTTATCAGCAGTGTTAGGAATTCTGGCGAACTCTTTAGTTTTTCACGGTCACGTCCAAACAAACGCCAAGGACGTGCGCTCAAAAGTCAGAAATGAGTGGGGCCATTGCAACTTTGATCATTGGACAGATATAGAGTTCACAAACTGTTTCCAGATCATGGAGACCATGGTTCGCTCTCTAGGACTTCCGAAACCCGACGAAGACAAACAACTCGACGATCTTCACGATTGGGAGACTAAAGGTTTGCAGCTGTGTATGGGCTGCCCAGTGGATAAAGATTTGGTGAGACTAATCAGTGTGGAGATTGCCAACCTTGAAAAAGAAGTGGAGAACATCAGAAACACAAGCACGGATGAAGCCAAGAAAATATGTGATGCCCTTATGACTATCAGAGACGAAATTGATGAATTTGCCAAGCGAATAGCTAATATTGAGAAGAGGCTGGAAGAAGAGCGAAAAGAACGGTTAGAAAAACAGGAAGAAATGTCAGGTGCAATTGGAGATATTTCTAGTGACTCAACAAAACTAGAGAAACGCCAAGAAATTAGTGAAGAGAACATCTCCCAATTAGAGGATAGGCAGAGTGACCTTGCGACCACTGTATCGTCCGTAAAAGACGAACAGGCTGGTCTTGCTTCTGAAGTAGGGGCCCTAAAAATCGAGCAAACCCGGCGGGATTCTAGAGTAAGAGCACTAGAAGAGGGTAGTTTAAATGCAACAGCCGATACTAAGATTTTTCAAGTCCCTTCTCGCAATCCCTGCTTTTGTGGTCGCGAAAGCGAGCTAGAAACCATTGCAGCGCAGCTCAAAAACACCCGGAATGGCTGTGTTCATTCAGTTATTTGTGGTCTTGGGGGTGTGGGGAAAACGTCTCTCGCTGTAGAATTTCTTTGTCGTCACGAGGGCGAATATCCTGGGGGTATTTTTTGGATTTCAGGGGAAAATAACAATATTTTTCAAAGGTCTATCAGCGAGTTAGCGCGTCAAATTGGAACTTTTGAAAACGATTTTTCGAGCTCTTTGTCGAGAACTCTTGACTGGCTGAGAAGACGTGAAGAGTCATGGTGTTTAGTCGTAGATAATCTTGACGAGCTGGAAATGTCCACAGACATGCGCAAGCTGGTCACTGGTCACTGGAAACACGCGGCTCGTGGTCACATTATCATCACCACAAGGAGAGAAATGTCAGAGATCGGCGAAGAAACGGGAATCGAAGAGCAATGTTGCATTGAGTTGAAGTGTTTGACCGAGGAAGAAGGCATTCAGTTTCTACGAATGCGAACGGGAAAGGCTGGTGGTGAGGATAGTGACATGCGTGAGCTTGTCCGAGAGCTTGGAGGACTACCTCTAGCACTTGATCAAGCTGGAGCCTACATTAGATGCGTGAATCCATCTATTGAAGATTACGCAAAGAAGTACAAGAAGCAAAAACTTCTTCTTTTGAATAAGAAAAAAGCCCGACATCTTGTAGAAGACACCACTCCTGAGCGGTTAGCTGTCCACACTACGTGGCTGTTGAATTTTGATTATATCAGTCGTATCTCGGAGGAGATGAATCTTGGAGAAGTACCCATTTTTGTAATGCAGGTGTGTGCGTTTCTTGGCCCAGACGATATTCCTTACGAATTGATCAACGACGGACTGAACAAGGAAGGCAGTTCTACGGTGGATAGCAGTTTGTGGGAACAGGGTGAAATAGTGTCCCTTCTTACTAAGTTTTCTTTGTTTCAAAGATACAGTACCAATTCGTTTAGTGTTCATCGTCTAGTGCAGGAGGTAATCCGTAGCCAACTGGAGAAAGAAACTAAGCTGAAAGTTCTTTCTTGCGCAGTACACATCCTTCACTTCGCACTGGTCCAAACACGTTCACCAGCAGCAGTTTGCGAAAGTTTTGTTGAAGATGCTGTTTTTAGTGTTGAAAATCCCCCGTCATTGCATCTATGGGGTAAGTTGGCTTCGCATGCCACCTATTTGCAAGAGCATTTGCGCAACTTCGCAATGAAATATAAAGAGTTGGTCCACACTTTGCTATATACAAAAGAAACCGTTCGAGTATTCAATGAAGCGGCTATCTTTTACAGTGTTTCCCAAGAAAAAGTGAAAGCTCAAGAAGTGCAGAAATTGAAACTGGACTTTCTTGTGAACCTTCATGAGGGAGTTCCTGAGAATGGTGCCAAACTGCCAAATTATTTCATTGACATTCCTTTGAAAGAAAGGGACTACAAGCTGATATGTCACTGTATGAGGTATCCTCCTGCTGAATGGGATGCTATGACTGAAGGAGATTCCTCTCAAAAGGAACGGGATGAGAAAGCTAACGAGCTTAGAGAACAAAGAAACATTGCAGTACAAAGGAAAAACTTTGAAGAGGCATCAAAGCTTTACTCCAGTGCAATTGTTTTCTCGGCTGGTGACTGTCGACTGTTTTTCAACCGAGCTCTGTGTTATTTAAAACTTGGTCAGCCACAGAAAGCACTTGATGACTGTGAAACGTGCCTTGCTTTAAACCCCAATTATAGCAAGGCACTACATCGCAAGTCCTGGGCTTTGCGTGAGCTCATTGAAGATGGATCTACTTATCTAATAGGAGAAAAGAAGGCAGCCCTTGCAAGGGCAATTCACTTTGATTCCAGTCTTCGGCGTGACAATACCTTTCGTAAAATGTTTCCAGAAGTACTCTCACTCACGGCTAGGGAAGTAAACAATGCTTCTCAGTTGGCTTTCGCTCTGATGACAGCACAGGCAAATGAAACCCTGCTATTGCATGAAGGAGAGTATAATTTAAATCACTTCGTAGCCTTTACGGACCTTCAGATTGTCGGTTTAGGACAGGAAGTAGTTTTGGCAATCAAAGAGCTCTTTGCTATCGTCCACACCAGGTGTTATTTTGAGAACGTGATTTTACCAGAAGGGAATGTTGGTCTGATCTGCCAAGAAAAAGATGCAGCTATTCACATGAAACATTGTAAAATTTCTGGAGGATATTCCAGTTGTGAGGACTATCCAGAATGTAACGGTGGACCAGGATGTATAGCAGCCTCTTTGGGAAAACCTGTTTGCGATCGCACTGATAAATTTGGAGACTCGAAATCAAAGTCTGGTTTTGGGGGTTTTCCTGGAGTTTCGATTACAAATGGGAGTTGTGCGCTCATTGAATACTGTGCTGTTCATGACTGTGGCGGTGGAGGTGTTCTGGTTGTTGGTGAAGGTTCCCAGCTGGAGGTCAGAAAATGTGAAGTGTTCAAGAACCACCAAGCTGGTTTAGAAGCCAGAGAGGGTGGGAAGCTTGTTGCCTCCGAGAACAGGATCTTTAATGGTCGTAATCACGGCATCTTAATTGGTCCAAATGCTGGAGAATGCCGTGTCAATAACAATAAGATATTCGAAAATGCAAGAGAGGGTGTCTTGGCCGTGAGCAACAAGAAAGAGATAAAAATCCACAACAACGATATTCATCACAACAGACCCTTTGGTATTTCACTTGACGACGATTCTGGTCTCTTGATCAATGACAACAAGATATTTGAGAATGGATTTTGGGGGATCCTTGCCAAATCACGAACCTCAGCAAAAATAACAAGAAACGTAATCTCAGGCAACAAATGCGGTGGCATTTTCATTGGTATAAATTATTCTGGACGTGTTTATTTAGAGTCAAACATAGTTCGCAATCACAGTGGCCCGTGGCTGGAGTACCAAAAGTTTCCCATTGATGATCACTTACTTAACGACGGTGGATCAGTTGGTGAAGATCTTCCACTGGGAGAAAAGAAGCTTTATTCCAACCCTCCAATTCTCAGGCTAAACAAAGAATTTAACAACGAAGAGGGCATGTATCACCCCAGAGAGGTTGCTGAACGAATTTACAGTGGCTGTACATTTTGTCGTCGCTCAAAACATGAAGTACACCGCCTCCAGAAATGTACAACCTGTCAGATTGCATCTTACTGCTGCAAAGAATGTCAACGTAAACACTGGCCCACTCATAAGACATTATGTATCGCTTTGAAAAGTCGTTATTCTGTAACAGTGAATTTTATTTCTATATTCAAGCCAGAAGTACTGCATATACGGACATTTGGAACTCATTTGAAAGGTATTGGAACAGGTCCTGAACCCAAACGTAACAGTCACCAAAAGTTCATCGTCAAAATTCAAACCAATCCTCTGAATAGTCATCCGTTGCAGTTGCTGACCGTTTACGACAAAAGCCTCACCATTGACTGTCGTATCCAAAGTCCTGAAATCTTCAGCGTGATAATGGAATGTGGTGTACTTGGAGCTTTACACAAATTCACGAGCAAAAAGGGTTTTTTCTGGGCCATATTTGCTGAAAAAGGAGAGAAATTGACTATTTTTCTCGATCACTTGGCTCCTTATCAGGAATGGTAA

Transcript

ANN32662-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A2J6RX17	Nucleotide-binding leucine-rich repeat (NLR)-like protein OS=Hyaloscypha variabilis (strain UAMH 11265 / GT02V1 / F) OX=1149755 GN=L207DRAFT_509616 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000290 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13229 all species →	Beta_helix	Right handed beta helix region	Repeat	Interproscan
PF00931 all species →	NB-ARC	NB-ARC domain	Domain	Interproscan
PF00515 all species →	TPR_1	Tetratricopeptide repeat	Repeat	Interproscan
PF01753 all species →	zf-MYND	MYND finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039448 all species →	Domain	Right handed beta helix domain	Interproscan
IPR012334 all species →	Homologous_superfamily	Pectin lyase fold	Interproscan
IPR051550 all species →	Family	SCF Complex Subunits and Alginate Epimerases	Interproscan
IPR006626 all species →	Repeat	Parallel beta-helix repeat	Interproscan
IPR002182 all species →	Domain	NB-ARC	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR002893 all species →	Domain	Zinc finger, MYND-type	Interproscan
IPR011050 all species →	Homologous_superfamily	Pectin lyase fold/virulence factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22990 all species →	F-BOX ONLY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043531 all species →	Molecular Function	ADP binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN32662-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.