Genomic Location: Scaffold_350__1_contigs__length_108602:13571...14587
NR annotation: MXW52486.1, glutamine synthetase [Gammaproteobacteria bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN32730-RA |
| Transcript |
| ANN32730-RA |
| Protein |
| ANN32730-RA |
| UniProt accession | Description |
|---|---|
| P04772 | Glutamine synthetase OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110) OX=224911 GN=glnII PE=1 SV=2 |
| Q02154 | Glutamine synthetase OS=Rhizobium leguminosarum bv. phaseoli OX=385 GN=glnII PE=1 SV=3 |
| P45626 | Glutamine synthetase OS=Rhizobium meliloti OX=382 GN=glnII PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002080 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03951 all species → | Gln-synt_N | Glutamine synthetase, beta-Grasp domain | Domain | Interproscan |
| PF00120 all species → | Gln-synt_C | Glutamine synthetase, catalytic domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR008147 all species → | Domain | Glutamine synthetase, N-terminal domain | Interproscan |
| IPR036651 all species → | Homologous_superfamily | Glutamine synthetase, N-terminal domain superfamily | Interproscan |
| IPR008146 all species → | Domain | Glutamine synthetase, catalytic domain | Interproscan |
| IPR050292 all species → | Family | Glutamine Synthetase | Interproscan |
| IPR014746 all species → | Homologous_superfamily | Glutamine synthetase/guanido kinase, catalytic domain | Interproscan |
| IPR027302 all species → | Conserved_site | Glutamine synthetase, N-terminal conserved site | Interproscan |
| IPR027303 all species → | Conserved_site | Glutamine synthetase, glycine-rich site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR20852 all species → | GLUTAMINE SYNTHETASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004356 all species → | Molecular Function | glutamine synthetase activity | Interproscan |
| GO:0006542 all species → | Biological Process | glutamine biosynthetic process | Interproscan |
| GO:0006807 all species → | Biological Process | obsolete nitrogen compound metabolic process | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01915 | glnA, GLUL; glutamine synthetase | EC:6.3.1.2 | Exosome | ko04147 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
