Gene detail

Detailed information of ANN32769-RA in Montipora grisea

Genomic Location: Scaffold_3639__1_contigs__length_35271:3196...7090
NR annotation: WP_150463389.1, pyruvate, phosphate dikinase [Francisella sp. XLW-1]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN32769-RA

ATGGCTAGTTATAGTACTAATGAGTTTAAGGGTGGCCTGAAAGTTTTAATCGATGGCAACCCAATGGTTATTATTGAAAATGAATTTGTAAAACCGGGTAAAGGACAGGCATTTAATAGGGTTAAACTAAAAAACCTATTAAATGACAGAGTAGTTGAGAAGACTTTTAAATCTGGCGAATCTGTTGAGGCTGCAGATGTTGAAGAATTATCTGCTGTTTACTCATACTTTGATGGTGAGTGCTATGTCTTTATGCATCCAGAAACTTTTGAGCAATATATGGTTTCTCAAGATGCTCTTGGTGAAACAAAAAAATGGCTCAAAGATCAAGATGAATATCAAGTAATTCTTTTTAATGGCCAACCCATCTCCATCATCCCTCCGAACTTTGTCAACTTAGAAATTATTGAGACAGATCCTGGTCTTAAAGGTGATACTGCAGGCACAGGTGGCAAACCAGCAACACTATCTACTGGTGCGGTAGTTAGAGTGCCTCTTTTTGTACAAACTGATAAAGACCTAAATATCATTGCAGAAGCAGAGCCAATAGCAATCCACCAATCAGATGAAATTCTAAATACAATGAATGAGTGGTGTATAAAGGTTCATGGAGAAACAGGTCTAACTCAGAGAGTAAAAGATAGTGGTAAAGGAGCTAATCTTAGTGAGATGCTTAATAGTGGATTGCCTGTACCAGATGGCTTTACAGTAACTACAGAAGCATGCCTAAAATACTATGATGACCGTCAAAAACTAAATGATCAGGTTAAAGAACAAATTTTTGCAAATGTTGCAGATTTAGAAAAAAGAACAGGCAAAACTTTTGGTGGAGGAAGTAATCCACTACTTGTATCCGTGCGTTCTGGTGCTAGAGTTTCTATGCCAGGTATGATGGACACAGTTCTAAACCTTGGTCTAAATGATGAAGTTGCAAGAGCTATGGTAGCAAAGACAAATAACGAGCAGTTTGTTTATGACAGCTACAGAAGATTCATAATGATGTTTGCAGATGTTGTTATGGACTGTGAGAAAAAACCTTTCGATAAAATACTTGATGATAAAAAAGAAAAGAGAAATGTCAAAAATGACTGCGATCTAAGTGCTCAAGACTATAAAGATATTGTTGCAGAATATAAGAAAGTCTACAAAGATCTAGTTGGCAAAGAATTTCCTACAGATCCTGTCGAGCAACTTTTAGCAGCTGTTGAAGCTGTATTTAGATCATGGAATGCTGAAAGAGCAATCATATATAGAGAAATCAATAATATCTCGAATAACTGGGGTACGGCTGTTAACGTCCAAGAAATGGTCTATGGTAACTCTGGAAATAACTCTGGTACAGGTGTTGCTTTTACAAGAAACCCTTCCACTGGAGAGAATGAACTTTTTGGTGAATATTTGATCAATGCTCAAGGTGAAGATGTAGTTGCAGGTACCAGAACTCCTGCACATATTTCAACTTTGAAAGACAAAATGCCAGAAGTGTTTAATGACTTTGTAAAAATTGCTAAAAATTTAGAAAATGTCTACAAAGATATGCAGGATATGGAGTTCACTATCGAAGATGGTAAGCTTTTCATGCTGCAAACAAGAAACGGTAAAAGAACTGCAAAAGCAGCTTTGAAAATAGCTGTTGATATGGCTAAAGAAGGCCTAATCACAAACGAAGAGGCTGTGATGATGGTTGAACCTCACTTGCTAGAGCAACTACTACATCCTAAATTTGATGAAAAAGCTCTTGCTTCTAAGCGCCCTCTTGGTTCTGCATTAGGTGCTTCACCAGGTGCTGCAAGTGGTAGAATATATTTTGATGTTGAATCTTTGCTAGCAGCTAAAGCTCGTGGTGAGGAAAAAACTATCCTAGTTAGAGTTGAAACTTCTCCTGAAGATATAGCAGGTATGAATGCTTGTAATGGTATCTTAACTCTACGTGGTGGTATGACATCTCACGCTGCTGTAGTAGCTCGTGGAATGGGTAAATGTTGCGTATCTGGATTAGAAGCAGCTAGAATCGATGAAGATAAAAAAACTATTACTTTTGAGAGAGGTCAAGTTTTCTCTGAGGGTGATTATTTATCTCTTGACGGTACAAAAGGTACTGTATACAGAGGTATTATCAAAACTGTTGATCCTGAAGTTACTCAAGACTTTGAAGAGTTTATGAAATTTGTTGACAATGTTCGTAAGCTTCGTGTTAGATGTAATGCTGATACATTCAAAGATGCTTCTGTTGCTAGAGCGTATGGTGCTGAAGGTATCGGACTATGCCGTACAGAACACATGTTTTTTGAAGAGGATCGCATATCTTATGTTAGACAAATGATCTTAGCTAAAGATAAAAAAGAAAGACAAAAGGCTTTGGATAAGTTGCTTCCAGTACAGCAACAAGACTTTGAAGAGCTTTTTGAAGCTATGGATAATCTAGCTGTAACTATCAGATTTATAGATCCTCCTCTACATGAATTTTTACCTCATGAAGTTGATGAGATTGATGACCTAGCCCGCGAATTTAATATTAGCTACAGTGAGTTAGAAGCTCGTATAGAAGCTTTAAATGAAATGAATCCTATGATGGGTCATAGAGGCTGTAGACTCGCTGTGACATATCCAGAAATCATCGAGATGCAAACTAAAGCTATCATCTATGCGGCAATATCAAGCAAACGTATGGGAATTGAAGTTAAACCTGAACTTATGATTCCATTAGTTAGCACTCTTGGAGAGTTCAAATTACTAAGCGGTATAGTTAGAGAAGTTGCTAACACAATTCTTAAACGTGAAAAAATAGATATCGACTATAAAGTTGGGGTAATGCTAGAAACTCCTCGTGGAGCTATTGGTGCAGGTCTGCTTGCTGAAGCTGGCAGTGAGTTCTTCTCATTTGGTACAAATGATTTAACTCAGATGACTTTTGGCTTTAGTAGAGACGATGCTAATAAATTCATTAAAGACTACCTTGAAAAGGGTATTTTAAGCTTCGATCCATTTGCTAGACTAGATCCTAAAGGTGTAGGTAAACTGATGGAAATAGCTAAAGAAGGTGTCAAAGCTGTTAACCCAAATGCTAAAATGGGTATATGTGGCGAGCATGGTGGTGAACCATACTCTGTTGGTTTCTGTCATGATTTGGATCTTGACTATGTATCTTGCTCTCCTTTTAGAGTTCCTATAGCAAGATTATCAGCTGCTCAAGCAAAAATTTATGCTGATCGCAGATAA

Transcript

ANN32769-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P22983	Pyruvate, phosphate dikinase OS=Clostridium symbiosum OX=1512 GN=ppdK PE=1 SV=5
Q59754	Pyruvate, phosphate dikinase OS=Rhizobium meliloti (strain 1021) OX=266834 GN=ppdK PE=3 SV=2
Q6AVA8	Pyruvate, phosphate dikinase 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PPDK1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0041246 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02896 all species →	PEP-utilizers_C	PEP-utilising enzyme, PEP-binding domain	Domain	Interproscan
PF09285 all species →	Elong-fact-P_C	Elongation factor P, C-terminal	Domain	Interproscan
PF01132 all species →	EFP	Elongation factor P (EF-P) OB domain	Domain	Interproscan
PF08207 all species →	EFP_N	Elongation factor P (EF-P) KOW-like domain	Domain	Interproscan
PF00391 all species →	PEP-utilizers	PEP-utilising enzyme, mobile domain	Domain	Interproscan
PF01326 all species →	PPDK_N	Pyruvate phosphate dikinase, AMP/ATP-binding domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000121 all species →	Domain	PEP-utilising enzyme, C-terminal	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR023151 all species →	Conserved_site	PEP-utilising enzyme, conserved site	Interproscan
IPR011768 all species →	Family	Translation elongation factor P	Interproscan
IPR001059 all species →	Domain	Translation elongation factor P/YeiP, central	Interproscan
IPR015813 all species →	Homologous_superfamily	Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily	Interproscan
IPR015365 all species →	Domain	Elongation factor P, C-terminal	Interproscan
IPR018274 all species →	Active_site	PEP-utilising enzyme, active site	Interproscan
IPR040442 all species →	Homologous_superfamily	Pyruvate kinase-like domain superfamily	Interproscan
IPR013815 all species →	Homologous_superfamily	ATP-grasp fold, subdomain 1	Interproscan
IPR013852 all species →	Conserved_site	Translation elongation factor P/YeiP, conserved site	Interproscan
IPR013185 all species →	Domain	Translation elongation factor, KOW-like	Interproscan
IPR010121 all species →	Family	Pyruvate, phosphate dikinase	Interproscan
IPR008991 all species →	Homologous_superfamily	Translation protein SH3-like domain superfamily	Interproscan
IPR008279 all species →	Domain	PEP-utilising enzyme, mobile domain	Interproscan
IPR036637 all species →	Homologous_superfamily	Phosphohistidine domain superfamily	Interproscan
IPR002192 all species →	Domain	Pyruvate phosphate dikinase, AMP/ATP-binding	Interproscan
IPR014722 all species →	Homologous_superfamily	Large ribosomal subunit protein uL2, domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22931 all species →	PHOSPHOENOLPYRUVATE DIKINASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016310 all species →	Biological Process	phosphorylation	Interproscan
GO:0016772 all species →	Molecular Function	transferase activity, transferring phosphorus-containing groups	Interproscan
GO:0003746 all species →	Molecular Function	translation elongation factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006414 all species →	Biological Process	translational elongation	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0043043 all species →	Biological Process	peptide biosynthetic process	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006090 all species →	Biological Process	pyruvate metabolic process	Interproscan
GO:0050242 all species →	Molecular Function	pyruvate, phosphate dikinase activity	Interproscan
GO:0016301 all species →	Molecular Function	kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01006	ppdK; pyruvate, orthophosphate dikinase	EC:2.7.9.1	Carbon fixation pathways in prokaryotes	ko00720	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.