Genomic Location: Scaffold_1988__1_contigs__length_47189:31727...33968
NR annotation: MYC37181.1, methionine--tRNA ligase [Chloroflexota bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN32779-RA |
| Transcript |
| ANN32779-RA |
| Protein |
| ANN32779-RA |
| UniProt accession | Description |
|---|---|
| B9KZR0 | Methionine--tRNA ligase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) OX=309801 GN=metG PE=3 SV=1 |
| Q3Z9G6 | Methionine--tRNA ligase OS=Dehalococcoides mccartyi (strain ATCC BAA-2266 / KCTC 15142 / 195) OX=243164 GN=metG PE=3 SV=1 |
| A5FS74 | Methionine--tRNA ligase OS=Dehalococcoides mccartyi (strain ATCC BAA-2100 / JCM 16839 / KCTC 5957 / BAV1) OX=216389 GN=metG PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002200 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF19303 all species → | Anticodon_3 | Anticodon binding domain of methionyl tRNA ligase | Domain | Interproscan |
| PF09334 all species → | tRNA-synt_1g | tRNA synthetases class I (M) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR029038 all species → | Homologous_superfamily | Methionyl-tRNA synthetase, Zn-domain | Interproscan |
| IPR009080 all species → | Homologous_superfamily | Aminoacyl-tRNA synthetase, class Ia, anticodon-binding | Interproscan |
| IPR041872 all species → | Domain | Methionyl-tRNA synthetase, anticodon-binding domain | Interproscan |
| IPR015413 all species → | Domain | Methionyl/Leucyl tRNA synthetase | Interproscan |
| IPR014729 all species → | Homologous_superfamily | Rossmann-like alpha/beta/alpha sandwich fold | Interproscan |
| IPR023458 all species → | Family | Methionine-tRNA ligase, type 1 | Interproscan |
| IPR014758 all species → | Family | Methionyl-tRNA synthetase | Interproscan |
| IPR001412 all species → | Conserved_site | Aminoacyl-tRNA synthetase, class I, conserved site | Interproscan |
| IPR033911 all species → | Domain | Methioninyl-tRNA synthetase core domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45765 all species → | METHIONINE--TRNA LIGASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000166 all species → | Molecular Function | nucleotide binding | Interproscan |
| GO:0004812 all species → | Molecular Function | aminoacyl-tRNA ligase activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0006418 all species → | Biological Process | tRNA aminoacylation for protein translation | Interproscan |
| GO:0004825 all species → | Molecular Function | methionine-tRNA ligase activity | Interproscan |
| GO:0006431 all species → | Biological Process | methionyl-tRNA aminoacylation | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01874 | MARS, metG; methionyl-tRNA synthetase | EC:6.1.1.10 | Transfer RNA biogenesis | ko03016 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
