Gene detail

Detailed information of ANN32933-RA in Montipora grisea

Genomic Location: Scaffold_4994__1_contigs__length_30585:21443...22643
NR annotation: MXX53936.1, mandelate racemase/muconate lactonizing protein [Dehalococcoidia bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B2TFM7	L-rhamnonate dehydratase OS=Paraburkholderia phytofirmans (strain DSM 17436 / LMG 22146 / PsJN) OX=398527 GN=rhmD PE=3 SV=1
Q13LW5	L-rhamnonate dehydratase OS=Paraburkholderia xenovorans (strain LB400) OX=266265 GN=rhmD PE=3 SV=1
B1YMY4	L-rhamnonate dehydratase OS=Burkholderia ambifaria (strain MC40-6) OX=398577 GN=rhmD PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0025619 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13378 all species →	MR_MLE_C	Enolase C-terminal domain-like	Domain	Interproscan
PF02746 all species →	MR_MLE_N	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029017 all species →	Homologous_superfamily	Enolase-like, N-terminal	Interproscan
IPR029065 all species →	Domain	Enolase C-terminal domain-like	Interproscan
IPR046945 all species →	Family	L-rhamnonate dehydratase-like	Interproscan
IPR036849 all species →	Homologous_superfamily	Enolase-like, C-terminal domain superfamily	Interproscan
IPR013342 all species →	Domain	Mandelate racemase/muconate lactonizing enzyme, C-terminal	Interproscan
IPR013341 all species →	Domain	Mandelate racemase/muconate lactonizing enzyme, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13794 all species →	ENOLASE SUPERFAMILY, MANDELATE RACEMASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0016052 all species →	Biological Process	carbohydrate catabolic process	Interproscan
GO:0016836 all species →	Molecular Function	hydro-lyase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12661	LRA3, rhmD; L-rhamnonate dehydratase	EC:4.2.1.90	Fructose and mannose metabolism	ko00051	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.