Gene detail

Detailed information of ANN32980-RA in Montipora grisea

Genomic Location: Scaffold_2177__1_contigs__length_45189:16938...19942
NR annotation: MYH20713.1, aminomethyl-transferring glycine dehydrogenase [Acidobacteriota bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN32980-RA

ATGATTCCTGAAGGCCTCTACTACAGCGAGGAGCACGAGTGGCTCCGTCCCGAAGGCGATGGAACCGCCACCATCGGGATCACCCATCACGCTCAGGAAGAGCTCGGAGACATCGTCTATGTCGAGCTGCCCGAGTCCGATATGCCGCTTGACGCTGGGGAACCCTTCGGGGCGGTGGAGTCGGTGAAGGCGGTGTCCGAGGTCTTTGCGCCGGTGGCCGGACGGGTGATCGCGATCAACGAGACGCTCGAGGACGCTCCCGAGGCGGTCAACGAGGATCCCTATGGCGCCGGATGGCTGATTCGGCCGTTCTTGTCCCCTGTTCTTCTGACCGGCGAAGAGCCCGCCGCTTCCTCGCCGTCCAAGACGGCCGCCGGGCCTGCGCTCACGGAGCAGTCGCCGGGTAGCCGCTCGAACCTCGTGGCCGGCGCGGCGCCGTTCGTCCGCCGTCACATCGGTCCGAGCCTGACCCAGCAAGCCGGGATGCTCCACGATCTCGGCATCGCTTCTCTCGACGAGCTGGTGGGACAGACCGTCCCCCAGGACATCCGGCGCAGCACTCCACTCTCGTTACCGGCGGCACTCTCCGAGGCCGAGTTGCTGGCTTCACTGCGCGCGATCGCCGGCGAGAACCGGGTGTGTCGCAGCTTCATCGGCCGCGGGTACTACGGAACCAACACCCCTCCGGTCTTGCTGCGCAACATCCTGGAAAACCCGGGCTGGTACACCCAGTACACCCCCTACCAATCAGAGATTTCGCAGGGTCGGCTGGAAGTCCTGCTCAATTTCCAGACGCTCGTCGCCGACATGACCGGCCTCCCGATCGCGGGCGCTTCGCTTCTCGACGAAGCCACCGCGGTCGCCGAGGCGGTGACCATGTGCGTCAGCGCCGGGCGGGGACGCCGCCGGATCTTCCTCGCCGACGAGCGCCTGCATCCCCAGTCCCTCGCTGTCATGGGAACCCGCGCCGAGGCTGCGGGCATCCGTCTGGAAGTCCAAGACCTCGCGGATCCAGCGGCGCTTTCCGAGTACCCGCAGTGGAGTGCGGTCGCTGGCGTCGCGGTGCAATACCCGGATACCACCGGCCGGATTCTCGATTGGCGACCCCTGATCGAGACGGTTCATCGACACGGCGGGCTGGTGGTGATGGCGACCGACCTCCTCGCCCTCGCGCTTCTCACCTCTCCCGGCAGATGGGGCGCGGACATCGCGGTGGGCTCGACCCAACGCTTCGGGATGCCGATGGGCGCCGGGGGCCCCCACGCCGCGTTCCTCGCCACCCGGCAGAAGCACGCCCGCCGGATGCCCGGGAGGGTTGTCGGGCTATCCCGCGATCGGGCCGGTCGCCCGGGGTATCGGCTCGCCCTCCAGACTCGGGAGCAGCACATCCGCCGAGCGCGGGCCACGAGCAACATCTGCACTGCCCAGGTGCTGCCGGCTTTGGTCGCGGCGAGCTACGCCGCCTGGCATGGCCCCGAGGGACTGATTCAGATCGCCCGCCGGGTCCGACAACGCACCCTCGCCCTTGCCGCCGGTCTCCGCCGCCTTGGGTCCGTTCTTCGACACGCTGCTGCTGCGGCCCGGGAACCGGAGGCCGAACGCATCGTCGCCGCGGCGGAATCCACCGGAGTGAACCTGGGTCGCTTCGATGCCGACCGGGTTGGAATCGCTCTCGACGAGACCGCGAGCTTCGCCGATCTGGACCGCATCCTGGCCGCATTCGCCGGAGGGAAGCCTCCGTTCTCCGCCGCTGACCTGCTGGAAACCGAGGAGATACCGCTCCCGCCGCCGCACCGGCGGGACGACGTGTTTCTCGACCACGAGGTCTTTCACGCGCACCGCTCCGAGCACGAGATGCTCCGCTATCTGCACCGGCTTCAGGCGCGGGATCTTTCGCTGACGACATCGATGATCCCGCTCGGGTCGTGCACGATGAAGCTCAACGCGACGGCCGAGATGATCCCGGTGACCTGGCCCGAATTCGCCGACATCCATCCGTTCGCGCCGGCCTCCCAGACGCGTGGGTACACCCGGATCTACCGCGAGCTCGAAGCCGATCTCGCCGAAATCACCGGGTTCGATGCGGTCAGTCTCCAGCCGAACGCTGGCTCCCAAGGCGAATTCGCTGGCCTGGTGATGATTCGCGCGTTCCACGAGAGCCGAGGCGAGTCGGATCGCGACGCTTGTCTGATTCCCATTTCGGCGCACGGAACCAACCCGGCCAGCGCCACCCTCGCCGGTTATCGGGTGGTTCCGGTCAAGACCAACCCCAACGGGGACATCGACCTCGGCGATCTAAGGAAGAAACTGGACCGGCACCGCGACCGGGCCGGGGCGTTGATGATCACCTACCCGTCGACGCACGGGGTCTTCGAGGAACAGGTCCGCGAGGCCTGCCGAATGGCGCACCAGGCGGGGGCGTTGGTGTACCTCGACGGTGCGAATCTGAACGCCCAGGTGGGGCTGACGACGCCTTCGGCGATCGGCGCCGACGTGTGTCACATCAACCTGCACAAGACGTTCTGCATTCCTCACGGGGGCGGGGGACCGGGCATGGGACCGGTGGCGGCGACCGCCGAGCTGGCGCCGTTTCTCCCCGGGCACCCGGATCTCGAGAACGGCCCCAACGCCATCGGTCCGGTTTCCGCCGCGCCTTACGGGAGTCCGGCGATCCTGCCCATCTCCTGGGCCTACATCCGGATGATGGGGCCGGCCGGTCTCAAAGAGGCGAGCGAGGTCGCGATCCTCTCCGCGAACTACATGGCGGACCGGCTCGCCGAGCACTACCCGTTGCTCTACACCGGGGAGCAGGGGCGGGTGGCGCACGAATTCATCCTGGACTGCCGCCCGTTCAAGAAGTCCTCCGGATCGAGGTCGAAGACATCGCCAAGAGGCTGA

Transcript

ANN32980-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q827D7	Glycine dehydrogenase (decarboxylating) OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=gcvP PE=3 SV=2
Q9I137	Glycine dehydrogenase (decarboxylating) 1 OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=gcvP1 PE=3 SV=1
B1W4G3	Glycine dehydrogenase (decarboxylating) OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / CBS 651.72 / NBRC 13350 / KCC S-0626 / ISP 5235) OX=455632 GN=gcvP PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002709 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02347 all species →	GDC-P	Glycine cleavage system P-protein	Domain	Interproscan
PF01597 all species →	GCV_H	Glycine cleavage H-protein	Domain	Interproscan
PF01212 all species →	Beta_elim_lyase	Beta-eliminating lyase	Domain	Interproscan
PF21478 all species →	GcvP2_C	Glycine dehydrogenase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR003016 all species →	Binding_site	2-oxo acid dehydrogenase, lipoyl-binding site	Interproscan
IPR017453 all species →	Family	Glycine cleavage system H-protein, subgroup	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR049315 all species →	Domain	Glycine cleavage system P-protein, N-terminal domain	Interproscan
IPR002930 all species →	Family	Glycine cleavage system H-protein	Interproscan
IPR011053 all species →	Homologous_superfamily	Single hybrid motif	Interproscan
IPR033753 all species →	Family	Glycine cleavage system H-protein/Simiate	Interproscan
IPR001597 all species →	Domain	Aromatic amino acid beta-eliminating lyase/threonine aldolase	Interproscan
IPR020581 all species →	Family	Glycine cleavage system P protein	Interproscan
IPR049316 all species →	Domain	Glycine dehydrogenase, C-terminal domain	Interproscan
IPR000089 all species →	Domain	Biotin/lipoyl attachment	Interproscan
IPR003437 all species →	Family	Glycine dehydrogenase (decarboxylating)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11773 all species →	GLYCINE DEHYDROGENASE, DECARBOXYLATING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005960 all species →	Cellular Component	glycine cleavage complex	Interproscan
GO:0019464 all species →	Biological Process	glycine decarboxylation via glycine cleavage system	Interproscan
GO:0006520 all species →	Biological Process	amino acid metabolic process	Interproscan
GO:0016829 all species →	Molecular Function	lyase activity	Interproscan
GO:0004375 all species →	Molecular Function	glycine dehydrogenase (decarboxylating) activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006546 all species →	Biological Process	glycine catabolic process	Interproscan
GO:0016594 all species →	Molecular Function	glycine binding	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0006544 all species →	Biological Process	glycine metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00281	GLDC, gcvP; glycine cleavage system P protein (glycine dehydrogenase)	EC:1.4.4.2	Lipoic acid metabolism	ko00785	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.