Gene detail

Detailed information of ANN33030-RA in Leptoseris scabra

Genomic Location: Scaffold_11__1_contigs__length_41608735:31617905...31634647
NR annotation: CAH3018761.1, unnamed protein product, partial [Porites evermanni]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN33030-RA

ATGAGGGTTGTTGCGTTAATCAGCGGTGGAAAGGACAGCTGTTATAATATGATGCAGTGTGTAGAGAATGGCCACGTTATTGTAGCCCTGGCAAATCTCAAGCCAACAGATGAAGCTGATGAGCTTGACAGCTATATGTACCAAACAGTCGGCCACAATGCCATTGACATGTATGCACAAGCTATGGACCTGCCGTTATATCGTGGAATGATCAAGGGCTCGGCAGTTTCTCAAGGCAAAGTGTACACAGAATCCCAAGAAGACGAAGTAGAAGACCTGTACAAGCTTCTTAAAAAAATAAAGGAGGATATTGCATTTGATGCCGTTTCAGTTGGAGCAATTCTGTCAGACTACCAAAGAGTCAGGGTGGAGAATGTGTGTTCTCGATTAGACCTATCTTCATTAGCATATCTTTGGAGACGAGACCAACAAGAGCTCCTCAGTGAAATGATCTCTTCTGGAATCAAAGCTGTTTTGGTGAAAGTTGCTGCAATGGATTTGAGTCCACATCGTCATCTAGGCTTGCCAATATCAGAGGTTTATTCACTAATGTGTAACCTGAACAAGAAGTATGGCTCAAATGTTTGTGGAGAGGGTGGAGAATATGAAACATTTACTTTGGATTGTCCATTGTTCAAGAAAGCTATAGTGATAGATGAAAGTGAAGTTGTCATTCATTCCAATGATGCATTTGCTCCTGTTGGTTTCCTTCACTTCAAGAAAATGCATTTACAAGACAAAGAACAAGTCTGTTCACAGTCCCTTAAAAGTCAGAAATGTCTGGAATCATTGGACAAGTTACAGATACAGCCAGATAATGTGAATTGTGAAGAGAGACAAAGAGATGTTCTGAAGACACAGAGAATAAGAGTTCCTATACGACCACAAGAAAACAATAAAGGTGTTGTGTTTCACAGCAGGTGTGGTGATTATATCTGGCTTTCTGGAATTTATGGCCATTGCACTGTTGAAGGGAAAACATTGTCAATTGATGATATAACAAGAAATGTCTTACAAGGGTTGATAGATACCCTAACTAGATTGAAAGCAAGCTTGAATAATGGAATGATAGTTCATCTTTTTGTGAAGAACATGGATGACTTTGCTAAAGTCAACTCAGTTTACAAAAGCTTTTTAACAGTTAACCCTCCTGCAAGGGCGTGTATTCAGCTAAACCTGCCAGATGACATTGCCATGCAGGTAGATTGTCTTGTTCATAGTCCTCAAAGTACTGAGGCCACAGTATGGGAAGCTATGCATGTTCAGAGCATTTCTCACTGGGCTCCAGCCAATATCGGTCCTTACAGCCAAGCAACAAAGGCTGGAGGCACCTTGTTTGTGTCAGGTTCCATTGGTTTGTGGCCTCCAACAATGACCATGGTATCAGGCGGCATATCACAAGAGGCACCTTTATCTTTGCGGCATGTTGACAGAGTCATAGCAACTGTGTCTCCTGGGGAATCACTTCATAGTGTTGTTCATGGATTTTGCTTTCTAACGTCATCTGCTTATGTGTCTGTTGCTAAGAATGCTTGGTATCAAGCAACAACATCAAAGGCTACAGACAGCAGTGAAGAAGACCTCAAGTCCCCAGTTAGTGTAATATCATACATCATAGTACCTGTTTTACCAAAGGGAGCGCTGGTGGAATGGCATGTTGTGGCACAGGAAAATCTTATCCAACATCAATATGGCTCCACGTCAGTGTGTAGGGACAGGTTCAGTATTGGTGTACAAAGCATTGCTGTCAAGGGAAATATCAATAACAGCTTTGCTGTTAACTTTGAAGTTGAGTCTGATTCAGCTGAGTGCAACTTGGAGGAAATCATGGCAACATTTATTAGCCAGTTACAATGTTGCATCTCACAACACAGTATCAGCATCACTGATCTGATGTATATGAGGATATTTTATGTCAAAGACATTATGGATCATTGGGATGCACAGGACTTTATACAAAGGGCCTTAGAGAGGACTACTGTTCCTGCACCTGCATTTTCTCTGATAACTGTAGATGGTTTTGAAAAGAAGGACACCATTATGCTATTCTCTTGCTTTTTACAAAGACCAGAGGAAAATATACTATAG

Transcript

ANN33030-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2RV01	Diphthine--ammonia ligase OS=Danio rerio OX=7955 GN=dph6 PE=2 SV=1
Q2HJF5	Diphthine--ammonia ligase OS=Bos taurus OX=9913 GN=DPH6 PE=2 SV=1
Q5M9F5	Diphthine--ammonia ligase OS=Rattus norvegicus OX=10116 GN=Dph6 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003436 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01902 all species →	Diphthami_syn_2	Diphthamide synthase	Family	Interproscan
PF01042 all species →	Ribonuc_L-PSP	Endoribonuclease L-PSP	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR030662 all species →	Family	Diphthine--ammonia ligase/Uncharacterised protein MJ0570	Interproscan
IPR002761 all species →	Domain	Diphthamide synthase domain	Interproscan
IPR035959 all species →	Homologous_superfamily	RutC-like superfamily	Interproscan
IPR006175 all species →	Family	YjgF/YER057c/UK114 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12196 all species →	DOMAIN OF UNKNOWN FUNCTION 71 DUF71 -CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0017178 all species →	Molecular Function	diphthine-ammonia ligase activity	Interproscan
GO:0017183 all species →	Biological Process	protein histidyl modification to diphthamide	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06927	DPH6; diphthine-ammonia ligase	EC:6.3.1.14	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.