Detailed information of ANN33031-RA in Montipora grisea

Genomic Location: Scaffold_6271__1_contigs__length_27423:13268...14938
NR annotation: MCE2557040.1, ribose-phosphate pyrophosphokinase [Acidobacteriota bacterium]
Species Montipora grisea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6AJL7Ribose-phosphate pyrophosphokinase OS=Desulfotalea psychrophila (strain LSv54 / DSM 12343) OX=177439 GN=prs PE=3 SV=1
Q7NM67Ribose-phosphate pyrophosphokinase OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) OX=251221 GN=prs PE=3 SV=1
Q8YN97Ribose-phosphate pyrophosphokinase OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=prs PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001402 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13793
all species →
Pribosyltran_NN-terminal domain of ribose phosphate pyrophosphokinaseDomainInterproscan
PF01386
all species →
Ribosomal_L25pRibosomal L25p familyDomainInterproscan
PF14693
all species →
Ribosomal_TL5_CRibosomal protein TL5, C-terminal domainDomainInterproscan
PF14572
all species →
Pribosyl_synthPhosphoribosyl synthetase-associated domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR029099
all species →
DomainRibose-phosphate pyrophosphokinase, N-terminal domainInterproscan
IPR029751
all species →
DomainLarge ribosomal subunit protein bL25, L25 domainInterproscan
IPR011035
all species →
Homologous_superfamilyLarge ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyInterproscan
IPR029057
all species →
Homologous_superfamilyPhosphoribosyltransferase-likeInterproscan
IPR005946
all species →
FamilyRibose-phosphate pyrophosphokinaseInterproscan
IPR000836
all species →
DomainPhosphoribosyltransferase domainInterproscan
IPR001021
all species →
FamilyRibosomal protein bL25, long-formInterproscan
IPR037121
all species →
Homologous_superfamilyLarge ribosomal subunit protein bL25, C-terminalInterproscan
IPR020056
all species →
Homologous_superfamilyLarge ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalInterproscan
IPR020057
all species →
DomainLarge ribosomal subunit protein bL25, beta domainInterproscan
IPR037515
all species →
FamilyRibose-phosphate pyrophosphokinase, bacterial-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10210
all species →
RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003735
all species →
Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840
all species →
Cellular ComponentribosomeInterproscan
GO:0006412
all species →
Biological ProcesstranslationInterproscan
GO:0000287
all species →
Molecular Functionmagnesium ion bindingInterproscan
GO:0002189
all species →
Cellular Componentribose phosphate diphosphokinase complexInterproscan
GO:0004749
all species →
Molecular Functionribose phosphate diphosphokinase activityInterproscan
GO:0005737
all species →
Cellular ComponentcytoplasmInterproscan
GO:0006015
all species →
Biological Process5-phosphoribose 1-diphosphate biosynthetic processInterproscan
GO:0006164
all species →
Biological Processpurine nucleotide biosynthetic processInterproscan
GO:0009165
all species →
Biological Processnucleotide biosynthetic processInterproscan
GO:0008097
all species →
Molecular Function5S rRNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ANN33031-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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