Genomic Location: Scaffold_3665__1_contigs__length_35155:17517...18927
NR annotation: KAI3490743.1, hypothetical protein L1887_44905 [Cichorium endivia]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN33192-RA |
| Transcript |
| ANN33192-RA |
| Protein |
| ANN33192-RA |
| UniProt accession | Description |
|---|---|
| Q8PJE2 | Translation initiation factor IF-3 OS=Xanthomonas axonopodis pv. citri (strain 306) OX=190486 GN=infC PE=3 SV=1 |
| Q8P7Z3 | Translation initiation factor IF-3 OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) OX=190485 GN=infC PE=3 SV=1 |
| Q9I0A0 | Translation initiation factor IF-3 OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=infC PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005277 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00453 all species → | Ribosomal_L20 | Ribosomal protein L20 | Family | Interproscan |
| PF05198 all species → | IF3_N | Translation initiation factor IF-3, N-terminal domain | Domain | Interproscan |
| PF00707 all species → | IF3_C | Translation initiation factor IF-3, C-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR049946 all species → | Conserved_site | Large ribosomal subunit protein bL20, conserved site | Interproscan |
| IPR005813 all species → | Family | Large ribosomal subunit protein bL20 | Interproscan |
| IPR036787 all species → | Homologous_superfamily | Translation initiation factor 3 (IF-3), N-terminal domain superfamily | Interproscan |
| IPR019814 all species → | Domain | Translation initiation factor 3, N-terminal | Interproscan |
| IPR001288 all species → | Family | Translation initiation factor 3 | Interproscan |
| IPR019815 all species → | Domain | Translation initiation factor 3, C-terminal | Interproscan |
| IPR036788 all species → | Homologous_superfamily | Translation initiation factor 3 (IF-3), C-terminal domain superfamily | Interproscan |
| IPR035566 all species → | Homologous_superfamily | Ribosomal protein bL20, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10938 all species → | TRANSLATION INITIATION FACTOR IF-3 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003735 all species → | Molecular Function | structural constituent of ribosome | Interproscan |
| GO:0005840 all species → | Cellular Component | ribosome | Interproscan |
| GO:0006412 all species → | Biological Process | translation | Interproscan |
| GO:0019843 all species → | Molecular Function | rRNA binding | Interproscan |
| GO:0003743 all species → | Molecular Function | translation initiation factor activity | Interproscan |
| GO:0006413 all species → | Biological Process | translational initiation | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0032790 all species → | Biological Process | ribosome disassembly | Interproscan |
| GO:0043022 all species → | Molecular Function | ribosome binding | Interproscan |
ANN33192-RA.Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
