Genomic Location: Scaffold_4600__1_contigs__length_31769:24015...25159
NR annotation: MXW67111.1, transcription termination/antitermination factor NusG [Gemmatimonadales bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN33329-RA |
| Transcript |
| ANN33329-RA |
| Protein |
| ANN33329-RA |
| UniProt accession | Description |
|---|---|
| Q9CK84 | Transcription termination/antitermination protein NusG OS=Pasteurella multocida (strain Pm70) OX=272843 GN=nusG PE=3 SV=1 |
| P0AFG1 | Transcription termination/antitermination protein NusG OS=Escherichia coli O157:H7 OX=83334 GN=nusG PE=1 SV=2 |
| P0AA01 | Transcription termination/antitermination protein NusG OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=nusG PE=3 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0018558 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00467 all species → | KOW | KOW motif | Family | Interproscan |
| PF00298 all species → | Ribosomal_L11 | Ribosomal protein L11, RNA binding domain | Domain | Interproscan |
| PF02357 all species → | NusG | Transcription termination factor nusG | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005824 all species → | Domain | KOW | Interproscan |
| IPR036769 all species → | Homologous_superfamily | Large ribosomal subunit protein uL11, C-terminal domain superfamily | Interproscan |
| IPR001062 all species → | Family | Transcription antitermination protein, NusG | Interproscan |
| IPR006645 all species → | Domain | NusG-like, N-terminal | Interproscan |
| IPR036735 all species → | Homologous_superfamily | NusG, N-terminal domain superfamily | Interproscan |
| IPR047050 all species → | Domain | NusG, N-terminal | Interproscan |
| IPR008991 all species → | Homologous_superfamily | Translation protein SH3-like domain superfamily | Interproscan |
| IPR020783 all species → | Domain | Large ribosomal subunit protein uL11, C-terminal | Interproscan |
| IPR014722 all species → | Homologous_superfamily | Large ribosomal subunit protein uL2, domain 2 | Interproscan |
| IPR043425 all species → | Family | NusG-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR30265 all species → | RHO-INTERACTING TRANSCRIPTION TERMINATION FACTOR NUSG | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0032784 all species → | Biological Process | regulation of DNA-templated transcription elongation | Interproscan |
| GO:0006354 all species → | Biological Process | DNA-templated transcription elongation | Interproscan |
| GO:0140673 all species → | Biological Process | transcription elongation-coupled chromatin remodeling | Interproscan |
| GO:0003735 all species → | Molecular Function | structural constituent of ribosome | Interproscan |
| GO:0005840 all species → | Cellular Component | ribosome | Interproscan |
| GO:0006412 all species → | Biological Process | translation | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02601 | nusG; transcription termination/antitermination protein NusG | - | Ribosome biogenesis | ko03009 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
