Gene detail

Detailed information of ANN33379-RA in Leptoseris scabra

Genomic Location: Scaffold_11__1_contigs__length_41608735:40002763...40011825
NR annotation: RUA04700.1, hypothetical protein DSY43_05905, partial [Gammaproteobacteria bacterium]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN33379-RA

ATGTTTTTCGCGCACGGATCAAACCACAGCTGTGGTGTGATGACACTCATAAGGAAAGATTTAGATTTTGAAGATGAATCGTGCCTATGTGATCCAGCTGGGAGATTTATTATTTTAAATGTGACTGTGCAAGGAGTTAAATATATTTTTGCCAATATTTATGCACCAAATAAAGTGCGTGATCAGTGCACATATTTTAAAGATTTACAGGAGAGGTTGGATGGTATAATCTCAAGCCCTGAGCAAAAAGTTGTCATTGGAGGTGATTTCAATGTCACTTTTGATTCTAATTTGGATTGTCTGGGTGGGTCGCCAGCCCAAAAAGAGTCGGTTAAGGTACTTGAAGAAATTTGTTTTGATATGGACCTCGTTGATATCTGGAGAATAAGAAATCCGGATGGAAGATTATTTACTTGGAAGCAAACAAGACCTTTGATCCAAAGAAGACTCGATTTTTGGCTGATTAGTGACATCTGTCAAGATGAAGTTGAACAAGTTAAAATTATACCCTCTATAAAATCAGATCATTCAGCAATTACACTACTTTTCAATGGAATTGAAGAACAGAGACACGGTCCGTCCCACTGGAAATTTAATTCTAACTTAACTAAGGACGAAGAGTACATAAAACTTATTACGGACAGCGTCCCAGTTTGGATTGTGGAGTTCAAAGATGTAAATGATAAAAGAGTGCTTTGGGATCTAATAAAATATAGAATTAGACAAGTCTCTTTGAAATACAGTAAAGAAAAAGCACGGTTAAGAAAAGCAAAAATACTTGAAATTGAAACGTCTCTTACATTTTATCAGAAAAAGTGCGCTGCCGATCCGTCAACAGAAAATTTTGAGCAGCTTGAAATTCTCAAAAGTAAGTACGACGCGCATTTTGATTATCTTTCAAAGGGTGCTATCATTCGATCTAGAGCGTCTTGGTATGAGAAGGGGGAAAAAAACACTAAGTACTTCTTAAGTCTAGAATCTCACAAAAAAGCTAAAAGCTGTGTTCGCAAAGTATTTACTAAAAATGGAACTTTAAGCTCAGATCCTAAGATAATTATGAACGAACTCGAAGATTTTTACACTGCTTTGTACGATAGTGAGGGTAACGTGCCAGACTGTGCAAATTTATTCCTCCGACATCCTGAAATCCCTAAACTATCGTCAGAGAAAGCAGCTACGTGTGAGGGCAAACTAACAGTGGAAGAATGTCTTCAAAGTCTTCAGTCTTTCAAAGAAAATAAATCACCAGGCAATGATGGACTTACTGTAGAATTTTATAAAACATTTTGGGGTATCTTAGACACAAAGATCGGATCAAAAGCAATTGCAAGGAGACTTCAAAAGGTGATACCCGATATAGTACACTACAATCAAAATGCATATGTAAAAGGAAAGTCTATATTTGATGCAGTAAGGGCAATAGATGATATTTTAGAATTTACAGAAAGAGAAAAGATCCAAGGCTTAATGGTAGCAATAGATTTTAAAAAAGCTTTTGACTCGATTAATAGGAATTTTATGTTAGAGACGCTATCCGCTTTTAACTTTGGTCCTACTTTCATGCGGTGGATTAGGACCTTCTATCTAAATATAACTAGTTCTGTCATGAATAATGGTTTTTCGACAGGCCCTTTCAATATACGTAGAGGTGTTAGACAGGGCGACCCTCTATCACCATATTTGTTCATTATCTGTTTGGAAACCCTTGCCATCACCGTGCGTGGAAATAAAAACATTCAAGGAATTCTAGTAGGCAAGGAAGAAATTAAATTAGAAATGTTTGCTGATGACGTCACAGCTTTTCTGAGAAATACTAGATCTCTTGAAGTTCTTCTTCATACTGCTGATCTGTTCAATAAATGTTCTGGACTCGAAATAAATTTCGAGAAAACTGAATGTATGTTCTTAGGTAATCATGTCTCCTCTATGGCCGCAACCGTCATTTCCTCCAAAAACATATGCGTGAAGCACACGATTAAAATTTTAGGTGTGTATTTTACGTATAATGATAGTCAGAGGAAAAGGTTAAATTTTGATGAGATTTTAAGATCAATCAAAGAGAAGTTACAAATGTGGAAGTGGAGAGATCTAACTATTTTAGGGAGGATTCAGATTGTAAAGACATTTGTGATACCGATATTCATGTATCGTGCCGGTTTAATTTGCGTGCAAAAAGATATCGTGACAGAGGTCAACAAATTACTTTTTAAATTTATTTGGAAAGGGAAAGACAAAGTCAAACGTTTATCTCTCATATCTGACTTGGATAAAGGTGGACTGAAAGCACCGCATCTAGAATCAATAATAAAGAGTCAAAGGATCATGTGTTGTAAGAAATTTGCTGAGAATCAACAAAGTAATTGGAAGATTATCCTATCCCATTATATGAAGAACGTGGGATCGAAATTGATTTTGCATTGTGCTTTTGATCTAAAGAAATTATGTATTCAATTACCCAAATATTATGAAGAGTGTTTCCGATGTTTCGCAAAATATTCAGTCGCAAATAAGTTAACAGAACAAGCAGTGTGCCAAGAGATACACAACACAGTTATTTGGAATAATAAGTTTATCTGTATACAAGGCAAGTCTGTTTTCTGCGAGGCATTGTTTGAAAAAGGAATAATTACACTGGAGGATCTTAAGACTGATGGGAATGATGTTATCACAGGCTTTCAAATTATGGCCAGTGCGTCATTTACACCTAAAGAAAAGTTTCAGCTTATGGCGATTATAGATGCAATACCAACACAGTGGCGACATCATTTAAAAATATGCAATAACTATGAATCCAATTCGTCGGTTCCCAATATTGCTCAGTTACATTTGAATGGTCACAATATTCGTCTCGATAAAGCTATCTCGAAAAATATTAACAAAGAAGTCCGCTCAAAGGTCGAGATTATACCAACCGCGCAGTCAAAATACTCGGAAAAATATAATTATCAACTAGATTGGCAAGAGATATATTGTATTCCCTTTAGAGTGACTGTAGACTCCAAATCACGTGAATTCCAGTTTAAGGTGTTACATAGGTATTTAGCGACGAATGAATTTCTTCATAAAATCGGCCTTGTATCTTCGTGTCTATGTACATTTTGCAAAAGAGAAAGTGAAACCATTGAACACCTCTTAATAGAATGTGATTACTCGAACAAGTTTTGGCAGGATTTAATTAAATGGCTCAATATGATAGATATCAAAGTGGAAGCGTTATCAGAGATTGACAAAATTTTTGGAATCTGGAAAAGGCAAGTAGACTTTCATCTTCTTAATCATTTCTTGATTCTGGCGAAACAGCATATTTACTCTTGTCGAAATAAAGGCTACCCGCCTTCACTAAGAACCTATCTTGCAAAAGTATCCCTTATATATCAAATTGAAACGACGATCGCTGAATCAAATGGTAAACGTGCTTTTCACGACGTTAAGTGGAAAAAGTTTTCTACTCAAATAATTGTCTGTGTTCAGAAGGGATTACCTTATATTGTTGCTCCATACGAAGCCCATGTGTCACAAGGATATGCTGACTTTGCAATAACAGAAGATTCAGACTTTCTTGTCTACGGCTGTAAGGAGAAAGAGGCAGCAAAAGAGGCTGCGGAGAATGAGCGACTTGTCCTTATCCAAGAGGAAATAGCCAAGGCAGAAAAAGAGGCAGAGGACTTGGAACAGCTTAGAAGGGCCCGAGAGCTAAGAGTTCCACCAACACCTGAGGGTGCACTTCCTGGAGCGGTACTC

Transcript

ANN33379-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P14381	Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1
P08548	LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1
P11369	LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000039 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF13966 all species →	zf-RVT	zinc-binding in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR029060 all species →	Homologous_superfamily	PIN-like domain superfamily	Interproscan
IPR026960 all species →	Domain	Reverse transcriptase zinc-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31635 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for ANN33379-RA. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN33379-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.