Genomic Location: Scaffold_3615__1_contigs__length_35390:20650...22892
NR annotation: MCK5326312.1, DNA topoisomerase I [Woeseiaceae bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN33390-RA |
| Transcript |
| ANN33390-RA |
| Protein |
| ANN33390-RA |
| UniProt accession | Description |
|---|---|
| Q87AQ6 | DNA topoisomerase 1 OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) OX=183190 GN=topA PE=3 SV=1 |
| Q9PEV8 | DNA topoisomerase 1 OS=Xylella fastidiosa (strain 9a5c) OX=160492 GN=topA PE=3 SV=1 |
| Q9KA23 | DNA topoisomerase 1 OS=Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=topA PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0012429 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01218 all species → | Coprogen_oxidas | Coproporphyrinogen III oxidase | Family | Interproscan |
| PF01300 all species → | Sua5_yciO_yrdC | Telomere recombination | Family | Interproscan |
| PF01131 all species → | Topoisom_bac | DNA topoisomerase | Family | Interproscan |
| PF13368 all species → | Toprim_C_rpt | Topoisomerase C-terminal repeat | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036406 all species → | Homologous_superfamily | Oxygen-dependent coproporphyrinogen III oxidase superfamily | Interproscan |
| IPR017945 all species → | Homologous_superfamily | DHBP synthase RibB-like alpha/beta domain superfamily | Interproscan |
| IPR023535 all species → | Family | Threonylcarbamoyl-AMP synthase | Interproscan |
| IPR001260 all species → | Family | Coproporphyrinogen III oxidase, aerobic | Interproscan |
| IPR006070 all species → | Domain | Threonylcarbamoyl-AMP synthase-like domain | Interproscan |
| IPR023405 all species → | Homologous_superfamily | DNA topoisomerase, type IA, core domain | Interproscan |
| IPR003602 all species → | Domain | DNA topoisomerase, type IA, DNA-binding domain | Interproscan |
| IPR013825 all species → | Homologous_superfamily | DNA topoisomerase, type IA, central region, subdomain 2 | Interproscan |
| IPR013497 all species → | Domain | DNA topoisomerase, type IA, central | Interproscan |
| IPR013824 all species → | Homologous_superfamily | DNA topoisomerase, type IA, central region, subdomain 1 | Interproscan |
| IPR025589 all species → | Repeat | Topoisomerase C-terminal repeat | Interproscan |
| IPR000380 all species → | Family | DNA topoisomerase, type IA | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR42785 all species → | DNA TOPOISOMERASE, TYPE IA, CORE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004109 all species → | Molecular Function | coproporphyrinogen oxidase activity | Interproscan |
| GO:0006779 all species → | Biological Process | porphyrin-containing compound biosynthetic process | Interproscan |
| GO:0002949 all species → | Biological Process | tRNA threonylcarbamoyladenosine modification | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0003725 all species → | Molecular Function | double-stranded RNA binding | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0003916 all species → | Molecular Function | DNA topoisomerase activity | Interproscan |
| GO:0006265 all species → | Biological Process | DNA topological change | Interproscan |
| GO:0003917 all species → | Molecular Function | DNA topoisomerase type I (single strand cut, ATP-independent) activity | Interproscan |
ANN33390-RA.
