Genomic Location: Scaffold_313__1_contigs__length_117996:24524...25971
NR annotation: MBU1908773.1, response regulator [Verrucomicrobiota bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN33415-RA |
| Transcript |
| ANN33415-RA |
| Protein |
| ANN33415-RA |
| UniProt accession | Description |
|---|---|
| Q9A5I5 | Response regulator PleD OS=Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15) OX=190650 GN=pleD PE=1 SV=1 |
| B8GZM2 | Response regulator PleD OS=Caulobacter vibrioides (strain NA1000 / CB15N) OX=565050 GN=pleD PE=1 SV=1 |
| Q2JKD9 | Adaptive-response sensory kinase SasA OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) OX=321332 GN=sasA PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004590 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00072 all species → | Response_reg | Response regulator receiver domain | Domain | Interproscan |
| PF02518 all species → | HATPase_c | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | Domain | Interproscan |
| PF00512 all species → | HisKA | His Kinase A (phospho-acceptor) domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001789 all species → | Domain | Signal transduction response regulator, receiver domain | Interproscan |
| IPR004358 all species → | Domain | Signal transduction histidine kinase-related protein, C-terminal | Interproscan |
| IPR005467 all species → | Domain | Histidine kinase domain | Interproscan |
| IPR003594 all species → | Domain | Histidine kinase/HSP90-like ATPase | Interproscan |
| IPR036890 all species → | Homologous_superfamily | Histidine kinase/HSP90-like ATPase superfamily | Interproscan |
| IPR003661 all species → | Domain | Signal transduction histidine kinase, dimerisation/phosphoacceptor domain | Interproscan |
| IPR036097 all species → | Homologous_superfamily | Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily | Interproscan |
| IPR011006 all species → | Homologous_superfamily | CheY-like superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43047 all species → | TWO-COMPONENT HISTIDINE PROTEIN KINASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000160 all species → | Biological Process | phosphorelay signal transduction system | Interproscan |
| GO:0016310 all species → | Biological Process | phosphorylation | Interproscan |
| GO:0016772 all species → | Molecular Function | transferase activity, transferring phosphorus-containing groups | Interproscan |
| GO:0000155 all species → | Molecular Function | phosphorelay sensor kinase activity | Interproscan |
| GO:0007165 all species → | Biological Process | signal transduction | Interproscan |
| GO:0005887 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0009927 all species → | Molecular Function | histidine phosphotransfer kinase activity | Interproscan |
| GO:0046777 all species → | Biological Process | protein autophosphorylation | Interproscan |
ANN33415-RA.Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
