Gene detail

Detailed information of ANN33507-RA in Montipora grisea

Genomic Location: Scaffold_2435__1_contigs__length_42790:1383...2827
NR annotation: MCJ8306786.1, RtcB family protein [Nitrosopumilus sp.]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q5JCZ1	tRNA-splicing ligase RtcB OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) OX=69014 GN=rtcB PE=3 SV=1
O27634	tRNA-splicing ligase RtcB OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) OX=187420 GN=rtcB PE=3 SV=2
Q6LXF9	tRNA-splicing ligase RtcB OS=Methanococcus maripaludis (strain DSM 14266 / JCM 13030 / NBRC 101832 / S2 / LL) OX=267377 GN=rtcB PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01139	RtcB	tRNA-splicing ligase RtcB	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036025	Homologous_superfamily	tRNA-splicing ligase RtcB-like superfamily	Interproscan
IPR001233	Family	RNA-splicing ligase, RtcB	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11118	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0008452	Molecular Function	RNA ligase activity	Interproscan
GO:0000971	Biological Process	obsolete tRNA exon ligation utilizing 2',3' cyclic phosphate of 5'-exon as source of linkage phosphate	Interproscan
GO:0003972	Molecular Function	RNA ligase (ATP) activity	Interproscan