Gene detail

Detailed information of ANN33611-RA in Montipora grisea

Genomic Location: Scaffold_3056__1_contigs__length_38425:24165...26819
NR annotation: MYD97104.1, DNA mismatch repair protein MutS [Gammaproteobacteria bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN33611-RA

ATGCTCCACCGGGTGCCGCCTCGCCCGAACGCTGCCGAGCGGTTACGCTTGGCGCTGCCGATGAACACCTTCCGCGCTTCCCTTGCCAGCCATACGCCGGTCATGCAGCAGTACCTGCGCATCAAGGCGCAGCATCCGAATGCGCTCCTGCTCTACCGCATGGGCGACTTCTACGAATTGTTTTTCGACGACGCCAAGGAGGCGGCCGCGCTTCTTGACATTGCCTTGACGGCCAGGGGGCGCACCGCCGGCACGCCGATTCCCATGGCCGGCGTACCCTACCATGCCCTCGACGGCTACCTCGCCAAGCTTGTCGAGGCCGGCAAGGCGGTCGCGATCTGCGAGCAGATCGGCGACCCGGCCGCCGCCAAGGGTCCGGTGGAACGTCGCGTCCAGCGGATCGTCACGCCCGGCACCCTCGCCGAGGACGGCCTGCTCACGCCCGAACGCGACAGCGTGCTGGTCGGCCTGGCGACAGAGGGCGTCGGCCCGGCGGCACGCTGGGGGGTTGCCTGGCTCAATCTGGGCTCCGGCGAGTTCGCGGTCAGTCACGCCGCGGGCGCCACCCAGCTCGCGGCGATCCTCGCCAGGCTGCGCCCTGCCGAAGTGCTCGTGCCGGAGCAGGCGGATGTCTCGGCCGACGCGCCGCTCCAATACCGGGACGCCCTCGAGTTCGATGCCGAACTGGGTTTCCGCCACCTCGCCGAGCACTTCGGCGTTCAGGACCTTGCGGCCTTCGGGCTGGCCCGCGGCGATGTCGCCATCGGGGCCGCGTCCGCGGTATTGCGCTATGCGCAATCGGCGCGCTGTCAAGAACTCGCCTTCGTCGACCGGCTCGCGATCGAAGCCGACGCCGATGTCGTCGTCATGGACGCGCACACGCGGCGCAACCTGGAAATCGACCGCCGCCTGGACGGTGAGACGACAGGCACGCTGTTCGCGGTGATGAACCACACCGCCACGGCGATGGGCGCCCGCAAACTGAGCGCGTGGCTGAATGCGCCGGTGCGCGACCGCAACGCCATCGTCGAACGCCAGCACGCCGTGGCCGGTATCCTTGAACAACGCAGCGCCGGGCTGCTGACACCGCTCTTGGCCGAGATCGGCGACCTGGAACGCATTGCCAGCCGGGTGGGCCTCGGCAATGCATCGCCACGCGATCTCGGCAAGCTTCGCCAAGCCGTGCAGGCGATGCCCGGCCTTAAGGATCTCGTTCAGGAGCTTGGCGACGAAGGGCTTGGCGCGAGATTTGCGGCGCTTGCCGCACTTGACGATGAACGCGCCCTGCTCGAACGGGCATTGGTGGCCGAGCCGCCTGCCACCACCCGCGACGGCGGTATTTTCGCACGCGGCTACGACGCCGAACTCGACCGCCTGAAGGACCTCACGGAAAACGCCGCCGGCTGGCTCGCCGCACTCGAGGCGCGCGAGCGCGAACGCACCGGCATCGCGACCCTCAAGGTGGGCTACAACCGCGTTCACGGCTACTTCATCGAAGCCGGTCGTGCGGCGGCGGATGCGGTGCCGCCCGAGTACGTGCGCCGGCAAACCTTGAAGAACGCCGAGCGCTACATCATGCCGGAACTCAAGAAATTCGAGGACGAAGCGCTGACCAGCCAAGCCCAGGCGCTCGCCCGCGAACGAGCATTGTTCGGCGAGCTCATCGAACGGCTGCAGACGCGCCTCGCCGACCTGCGGCAGACCGCCCGCGAAGTGAGCCGCCTCGATGTGCTCAACTCGTTCGCCGTCGCGGCGCAGCACAACGACTACGTGCGTCCGGCGTTGACCGACGAATGCGGCATCGCCGTCGAAGCCGGCCGTCATCCTGTCGTCGAGGCGGCGGCATCGGATACGCCTTTCGTCCCGAACGACCTCGCGTTGGGCGACCAGCGGCGGCTGCTGATCATCACCGGGCCGAACATGGGCGGCAAGTCGACGTACATGCGGCAGACGGCGTTGATCGTCCTGCTGGCGTACACGGGCAGTTTCGTGCCGGCGCGCACGGCCGCCATCGGTCCCGTCGACCGCATTTTCACACGCATCGGCGCCTCGGACGACTTGGCGCGGGGGCGCTCGACGTTCATGGTGGAGATGAGCGAGACCGCGCATATCCTGCACAACGCGACCAGCGAGAGCCTTGTCCTGCTCGACGAAATCGGGCGCGGCACCAGCACCTACGATGGCTTGGCGCTGGCTTGGGCCACTGCCCGGCACATCGCCCGGAAAATCGGTGCATTGACGCTGTTCGCCACCCACTACTTCGAGTTGACAGCGTTGCAGTTGGAACTTGCCGCAGCCGCCAACGTGCATCTGGATGCGGTGGAACACGGCGGCGAGGTCGTGTTCCTGCACAGCGTCCGGGACGGCCCGGCCAGCCAAAGCTACGGGATTCAGGTGGCCAAGCTCGCCGGCGTTCCCAAGAGTGTCCTTGACGAAGCGCACCGCCGCCTGACCGAACTGGAGATGCACCATCAAGATGGCGCCCTGATCGCGCAAGGGGACCTGTTCGAGTTCTTCCGCAATCAGGGAGCCGATGAACGGGGAGCCGACGAACACCCGGCGCTCGACGAACTGCGGGCGCTCGACCCGGACGAACTGACGCCGCGCGAAGCGCTCGCGGCGCTGTATTCGCTGAAGGGCCTGATCGGCAAGTGA

Transcript

ANN33611-RA

Protein

Uniprot

Uniprot term	Description
Q3JCL5	DNA mismatch repair protein MutS OS=Nitrosococcus oceani (strain ATCC 19707 / BCRC 17464 / JCM 30415 / NCIMB 11848 / C-107) OX=323261 GN=mutS PE=3 SV=1
Q0A8K3	DNA mismatch repair protein MutS OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) OX=187272 GN=mutS PE=3 SV=1
Q60BA1	DNA mismatch repair protein MutS OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) OX=243233 GN=mutS PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01624	MutS_I	MutS domain I	Domain	Interproscan
PF05190	MutS_IV	MutS family domain IV	Domain	Interproscan
PF05188	MutS_II	MutS domain II	Domain	Interproscan
PF05192	MutS_III	MutS domain III	Domain	Interproscan
PF00488	MutS_V	MutS domain V	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007696	Domain	DNA mismatch repair protein MutS, core	Interproscan
IPR036187	Homologous_superfamily	DNA mismatch repair protein MutS, core domain superfamily	Interproscan
IPR036678	Homologous_superfamily	MutS, connector domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR005748	Family	DNA mismatch repair protein MutS	Interproscan
IPR045076	Family	DNA mismatch repair MutS family	Interproscan
IPR000432	Domain	DNA mismatch repair protein MutS, C-terminal	Interproscan
IPR007695	Domain	DNA mismatch repair protein MutS-like, N-terminal	Interproscan
IPR007861	Domain	DNA mismatch repair protein MutS, clamp	Interproscan
IPR016151	Homologous_superfamily	DNA mismatch repair protein MutS, N-terminal	Interproscan
IPR007860	Domain	DNA mismatch repair protein MutS, connector domain	Interproscan
IPR017261	Family	DNA mismatch repair protein MutS/MSH	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11361	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006298	Biological Process	mismatch repair	Interproscan
GO:0030983	Molecular Function	mismatched DNA binding	Interproscan
GO:0003690	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0140664	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03555	mutS; DNA mismatch repair protein MutS	-	DNA repair and recombination proteins	ko03400	deepkoala