Genomic Location: Scaffold_3953__1_contigs__length_33904:32069...33904
NR annotation: WP_223117853.1, DNA primase [Ruegeria sp. SCSIO 43209]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN33675-RA |
| Transcript |
| ANN33675-RA |
| Protein |
| ANN33675-RA |
| UniProt accession | Description |
|---|---|
| P0A118 | DNA primase OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) OX=160488 GN=dnaG PE=3 SV=1 |
| P0A119 | DNA primase OS=Pseudomonas putida OX=303 GN=dnaG PE=3 SV=1 |
| P0ABS6 | DNA primase OS=Escherichia coli O157:H7 OX=83334 GN=dnaG PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0014675 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01807 all species → | zf-CHC2 | CHC2 zinc finger | Domain | Interproscan |
| PF08275 all species → | DNAG_N | DNA primase catalytic core, N-terminal domain | Domain | Interproscan |
| PF13155 all species → | Toprim_2 | Toprim-like | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR030846 all species → | Family | DNA primase DnaG, bacteria | Interproscan |
| IPR002694 all species → | Domain | Zinc finger, CHC2-type | Interproscan |
| IPR050219 all species → | Family | DnaG Primase | Interproscan |
| IPR006171 all species → | Domain | TOPRIM domain | Interproscan |
| IPR037068 all species → | Homologous_superfamily | DNA primase, catalytic core, N-terminal domain superfamily | Interproscan |
| IPR036977 all species → | Homologous_superfamily | DNA Primase, CHC2-type zinc finger | Interproscan |
| IPR013264 all species → | Domain | DNA primase DNAG, catalytic core, N-terminal | Interproscan |
| IPR006295 all species → | Domain | DNA primase, DnaG | Interproscan |
| IPR034151 all species → | Domain | Bacterial DnaG primase, TOPRIM domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR30313 all species → | DNA PRIMASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003896 all species → | Molecular Function | DNA primase activity | Interproscan |
| GO:0006269 all species → | Biological Process | DNA replication, synthesis of primer | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0006260 all species → | Biological Process | DNA replication | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02316 | dnaG; DNA primase | EC:2.7.7.101 | DNA replication proteins | ko03032 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |