Gene detail

Detailed information of ANN33821-RA in Montipora grisea

Genomic Location: Scaffold_3298__1_contigs__length_37155:13839...16717
NR annotation: MCB1595644.1, DEAD/DEAH box helicase [Xanthomonadales bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN33821-RA

ATGACTTCTATCAAATTATTGACCTTGCTGCTTACCACTTTGACAACCAGTCCACCTGAAAATGTCAGTTTTCAATCTGTACTTGAACAACCCCAAACTGTGGCTCATCAACGTGTGACTTATGGCGAAGGGACACTGCACTGGGGGGACTTGTGGATTGGTGATTCAGACAAACCACTGTTGGTGATGATACATGGCGGTTGTTGGCTGAATGCGTTCGGAGCTGATCATTTGGTGCCCATGGCCACTGATCTGAATCAACACGGCTATTCAGTCTACACACCAGAATACCGCCGCACGGGTGATGAAGGTGGTGGATGGCCAGGTACTTATGAAGACATCAAAGCAGCTTTAAACCATGTGTCGAAACTGCCAGAAAGCGTCAATAAATCTCAGGTCATTTTGATGGGTCATTCGGCCGGTGGCCATTTGGCCCTGTTGGCCACCCAAGATGGTTTACTGCCCAACTTGTCTAAGACCATAGGACTGGCTGCCATCACTGACCTACCGACTTATGCCCAAGGCAACAATGGCTGTCAAAAATCGGGTGTGGTTTTTATGGGTGGTACAGAAACAGAAAGACCTGAAGCCTATCAACAAGCTGATCCCCAACAAAAAGGCAACTACAACAACACCTTACTGTTGCAAGGAGGCGCGGACACCATTGTTCCAAGCAGTCAAGCCCAATTGAAAGGTGCTGGAGTCATTGTGGTGAAAGGAGCGGGGCACTTTGATTGGATCCACCCCAAAACACGAGCGTATGATCAATTGTTGAAGGCCCAAGCGATTCCTGCCGTATTGACAGGAAAGGATGTATTGGCCGCTGCCCAGACAGGCACAGGAAAAACCGCAGGATTTACCTTGCCTTTGTTAGAGCGCCTGTCCAAAGGTCGTTCAGCTCATTTCAATGCCGCGCGCGCCTTGGTTCTGACACCCACGCGAGAACTGGCAGCACAAGTCGGTGAAGCGGTTGAAATCTATGGTCAGAATTTAAAGCTTAAATCAACAGTTGTTTTTGGCGGCGTAAAAATCAACCCACAAATGATGAAGCTGCGATCGGGTGTGGACGTTTTGATCGCGACGCCTGGACGTTTGCTGGATCTTTACAGCCAAAATGCCGTTCGATTTGATGATTTAGAGGTGTTGATTTTGGATGAAGCAGATCGCATGCTCGACATGGGCTTCATCCATGACATCAAACGCATCATCAAATTGTTGCCGAAAAAACGCCAAAACTTGATGTTTTCGGCCACCTTTTCGCCTGAGATCAAACAACTGGCCAAAACCATCACCCACCACCCAGTGGAAATATCAGTCAGCAAAAATGAAGCAGCCGCATCGGTTGAGCATTGGCTGCATCCCGTTGACAAGAAACAAAAACCCGCTTTGTTACGACATTTGATTAATGAACAAGCTTGGCAACAGGTGTTGGTGTTTTGTCGCACCAAACACGGTGCCAACCGTTTAACGACTTACTTGGAAAAAAACAACATCAAAGCTGCAGCCATTCATGGCAACAAAAGCCAAGGGGCCAGAACCAAGGCGCTGTCAGGGTTCAAAAACAAAAAGATACAAGTCTTGGTGGCCACAGACATCGCTGCACGTGGCATCGACATCGATCAACTGCCACAGGTGGTTAATTTTGACCTGCCCAATGTCGCCGAGGACTATGTTCACCGCATCGGCCGCACTGGCCGTGCTGGTTCAACAGGTCAAGCGATATCCTTAGTCAGTGCCGATGAAGTCAAACAACTCAAAGACATCGAACGCCTGATCCAGCAAAAACTGGATCGTCGCTATGTCGACGATTTTGAACCCGTTCACGAAGTGCCTGCGACGGAAAAGCCAGCCAAAGTCGGCCAACCGAAGAAAATCAAACGAGCGAAACCAAAAAACTTTGTTAAAGCCAGTGTTAAGGCCAAGTGGGCCGCCCGCAGTGGTGAAAAAAACAAGGAAGCTCAAAACCACAGCAGCAAAGCCCAGGCGAGTCAGAAAGGCCCCAACAAATCAAAAACAGGACAAGGCAAAAGCGCGCAAAAACCAGCGGGTCAAGGGAAAAACAAAAAGTTCGCGCGCAAAAGAACCAGCCACAAATCGAGCGGTTCAGCCGAGTTCGGCCGGCCCTTCAACTACCGCGCCTTCTGGCAATTCCTGGAACAGCAGGGCAACATCACCTGTGCCATCGCCTATGCCGTGCGCAGCAGCGACGATTCACAAATCAAATTCCAAGATGCCTTGCGCCACATCGGCTTCGAAGTCAAACTGAAAAACTTCATCCAACGCAAAGACGGCAGCACCAAAGCCGACTGGGATGTAGGCATCACCATCGACATCATGGAACAAGCCTTCGAGCTTGATGAAATCATCCTGGTTTCAGGTGACGGGGACTTCGCCATCCTGCTCAAACACGTGATGGACAAACATCGCATCAAAACCACCGTCTGCGGCGTCAAAAACCTGAGCGCCAACGAACTGATCAACACCTGCACCACCCATCACCCCATCGAAAACTGCTGGTTGATTTCTTAA

Transcript

ANN33821-RA

Protein

Uniprot

Uniprot term	Description
P25888	ATP-dependent RNA helicase RhlE OS=Escherichia coli (strain K12) OX=83333 GN=rhlE PE=1 SV=3
Q73EU1	DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus cereus (strain ATCC 10987 / NRS 248) OX=222523 GN=cshA PE=3 SV=1
A0R8U6	DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus thuringiensis (strain Al Hakam) OX=412694 GN=cshA PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20434	BD-FAE	BD-FAE	Family	Interproscan
PF01936	NYN	NYN domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR049492	Domain	BD-FAE-like domain	Interproscan
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR029058	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR050079	Family	DEAD box RNA helicase	Interproscan
IPR021139	Domain	NYN domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000027	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0004540	Molecular Function	RNA nuclease activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan