Gene detail

Detailed information of ANN33824-RA in Montipora grisea

Genomic Location: Scaffold_7478__1_contigs__length_24788:5409...7565
NR annotation: CAE7405154.1, sucA [Symbiodinium microadriaticum]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN33824-RA

ATGAACATCCACGAATACCAGGCGAAAGCCGTCCTGAAATCCTTCGGCGCACCCGTAGCTGATGGACGCCCAGTTCTCGCATTAGACGAAATTGAAGCAGCGGTTGATGCGCTGCCGGGGCCGCTCTGGGTTGTGAAATCCCAAATCCACGCAGGTGGCCGGGGTAAGGGCAAATTCGAAGAGCCAGAAGCTGGTGAAAAGGGCGGTGTCCGCCTCGCCTTCTCAAAAGAGGAAGCGGTTGAGCACGCGAAAGCCATGTTCGGCAAACACCTTGTCACCGAGCAGACCAATGGTGTCGGCAAACAGGTGAACCGCCTCTACATCGAAGACGGCGCAGACATTGAGAGCGAGCTTTACCTCTCAATGGTTGTTGATCGCAAAACCGGCGGCGTTGCAGTTGTTGCGTCGACCGAAGGCGGCATGGACATCGAAGCGGTTGCGCACGACACGCCAGAGAAAATCCAGAACATCCAAATCGATCCAACTGAAGGCATGACAGCCGCCAAGGCGCAGGAAATTTGCGATGGCCTGAAGCTTTCAGGATCAGGCGCAGCTGATGGCCTCGATCTTTTCCCGAAGCTCTACAAAGCCTTCACGAAAAAAGACATGTCGATGCTGGAGATCAACCCGCTGATCGTGATGGAGAATGGTCATCTGCGCGTGCTGGATGCGAAAGTTTCATTCGACGGCAACGCACTTTTCCGCCACCCGGACATTGAAGAGCTACGCGACGAAACGGAGCAAGACGCAAAAGAAGTCGAAGCGGGCGAGTGGGATCTTGCTTACATCGCTCTGGAAGGCACAATTGGTTGCATGGTGAACGGCGCGGGCCTCGCCATGGCGACAATGGATATCATCAAGCTCTATGGTGAAGAGCCAGCTAACTTCTGTGATGTTGGCGGCGGCGCGGACGCTGAGAAAGTGGCTGCTGCGTTTAAGATCATCATGAAAGACCCGAACGTAAAAGGCATTCTGGTGAATATCTTCGGCGGCATCATGAAGTGTGACGTCATCGCAGAAGGCGTGCTTCAGGCGGTGAAAGAAACCAATCTTTCCGTGCCGTTGGTTGTGCGTCTCGAAGGGACGAATGTTGATCGCGGTAAAGAGATTATCGCGACTTCAGGCCTCAACGTTATTCCGGCGGACGATCTCGACGACGCCGCTCAGAAAATTGTCGAGAAATCGAAAAACATGTCCATTCTCATCGACAAAGATACCAAAGTTATCGTCCAGGGCCTGACGGGCAAAACTGGCAGTTTCCACACCGAGCAAGCGCTTGCTTATCACGGCACGCAAATGGTTGCCGGAACGCACCCGAAAAAAGGTGGCACGAATTGGGAAGGCTCCAATGGCGAGTCTGTGCCTATCTACACCACGGTTGCTGATGCGAAAGACGCAACAGGCGCGAACGCTTCTGTGATCTACGTTCCGCCAGCCTTTACAGCAGGCGCAATTGAAGAAGCGATCGATGCGGAAATCCCGCTCATCATTTGTATCACTGAAGGCGTTCCTGTGCTCGACATGGTGCGCGTGAAAGCGAAGCTCGATAAATCAAACTCACGCCTGATCGGGCCGAACTGCCCAGGCGTTCTGACCCCTGAGCAGTGCAAGATCGGCATTATGCCAGGTAAGATCTTCAAGAAGGGATCGGTTGGTGTTGTCTCTCGCTCCGGTACGCTGACATACGAAGCTGTGTTCCAGACAACGAATGCAGGCCTCGGCCAGACGACAGCTGTCGGCATTGGCGGCGACCCTGTTAAAGGCACTGAGTTCATCGACATGCTGGAAATGTTCCTTGCAGATGATGAGACCGAGCAGATCATCATGATCGGTGAAATCGGCGGTACAGCAGAAGAAGAAGCTGCGCAGTTCCTGAAAGATGAAGCGGCAAAAGGCCGGAAGAAGCCAATGGTTGGATTCATCGCAGGCCGCACAGCGCCGAAAGGCCGGACAATGGGCCATGCTGGCGCAATTGTGAGTGGCGGTGAGGGCGATGCTGAGTCCAAGATCGCGGCGATGGAATCTGCAGGCATTCGGGTGTCTCCAAGCCCGGCCCGTCTCGGTTCGACAATGTTAGAGGTTTTGAAAGGATAA

Transcript

ANN33824-RA

Protein

Uniprot

Uniprot term	Description
Q0C5F3	Succinate--CoA ligase [ADP-forming] subunit beta OS=Hyphomonas neptunium (strain ATCC 15444) OX=228405 GN=sucC PE=3 SV=1
Q0AKU3	Succinate--CoA ligase [ADP-forming] subunit beta OS=Maricaulis maris (strain MCS10) OX=394221 GN=sucC PE=3 SV=1
B3PQ90	Succinate--CoA ligase [ADP-forming] subunit beta OS=Rhizobium etli (strain CIAT 652) OX=491916 GN=sucC PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08442	ATP-grasp_2	ATP-grasp domain	Domain	Interproscan
PF02629	CoA_binding	CoA binding domain	Domain	Interproscan
PF00549	Ligase_CoA	CoA-ligase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013815	Homologous_superfamily	ATP-grasp fold, subdomain 1	Interproscan
IPR005809	Family	Succinate--CoA ligase-like, beta subunit	Interproscan
IPR017866	Conserved_site	Succinyl-CoA synthetase, beta subunit, conserved site	Interproscan
IPR013650	Domain	ATP-grasp fold, succinyl-CoA synthetase-type	Interproscan
IPR003781	Domain	CoA-binding	Interproscan
IPR005810	Family	Succinyl-CoA ligase, alpha subunit	Interproscan
IPR005811	Domain	ATP-citrate synthase/succinyl-CoA ligase, C-terminal domain	Interproscan
IPR016102	Homologous_superfamily	Succinyl-CoA synthetase-like	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR033847	Conserved_site	ATP-citrate lyase/succinyl-CoA ligase, conserved site	Interproscan
IPR017440	Active_site	ATP-citrate lyase/succinyl-CoA ligase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11815	SUCCINYL-COA SYNTHETASE BETA CHAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006099	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004775	Molecular Function	succinate-CoA ligase (ADP-forming) activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006104	Biological Process	succinyl-CoA metabolic process	Interproscan
GO:0042709	Cellular Component	succinate-CoA ligase complex	Interproscan