Genomic Location: Scaffold_7963__1_contigs__length_23649:9174...10607
NR annotation: WP_119167502.1, metalloprotease TldD [Algihabitans albus]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN33862-RA |
| Transcript |
| ANN33862-RA |
| Protein |
| ANN33862-RA |
| UniProt accession | Description |
|---|---|
| P0AGG9 | Metalloprotease TldD OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=tldD PE=3 SV=1 |
| P0AGG8 | Metalloprotease TldD OS=Escherichia coli (strain K12) OX=83333 GN=tldD PE=1 SV=1 |
| P0AGH0 | Metalloprotease TldD homolog OS=Shigella flexneri OX=623 GN=tldD PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0015721 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF19290 all species → | PmbA_TldD_2nd | PmbA/TldA metallopeptidase central domain | Domain | Interproscan |
| PF01523 all species → | PmbA_TldD_1st | PmbA/TldA metallopeptidase domain 1 | Domain | Interproscan |
| PF19289 all species → | PmbA_TldD_3rd | PmbA/TldA metallopeptidase C-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR025502 all species → | Family | TldD | Interproscan |
| IPR051463 all species → | Family | Peptidase U62 metalloprotease | Interproscan |
| IPR045570 all species → | Domain | Metalloprotease TldD/E, central domain | Interproscan |
| IPR002510 all species → | Domain | Metalloprotease TldD/E, N-terminal domain | Interproscan |
| IPR036059 all species → | Homologous_superfamily | Metalloprotease TldD/PmbA superfamily | Interproscan |
| IPR045569 all species → | Domain | Metalloprotease TldD/E, C-terminal domain | Interproscan |
| IPR035068 all species → | Homologous_superfamily | Metalloprotease TldD/PmbA, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR30624 all species → | UNCHARACTERIZED PROTEIN TLDD AND PMBA | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006508 all species → | Biological Process | proteolysis | Interproscan |
| GO:0008237 all species → | Molecular Function | metallopeptidase activity | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03568 | tldD; TldD protein | - | Peptidases and inhibitors | ko01002 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
