Gene detail

Detailed information of ANN33888-RA in Leptoseris scabra

Genomic Location: Scaffold_16__1_contigs__length_5761142:89211...114498
NR annotation: CAH3174267.1, unnamed protein product [Porites lobata]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN33888-RA

ATGAATCACTCGGAAGATCCTAATTTACATTCCACATTGGAACTAGATCACGATGCTTTGAACTTCGTTTACTTGGAAGAGTATCTGTGTCCTGACGTTGTGGGCAACCCCGATGGCGGTATTGATGGCACAGGACAATTTAATTTTGGATTTGGAACAGATGACATACCTAATCAGGAGCACCTTTTTCCTTTAAGTTACAATGTAAGTAAGTTAAGAAACCTCACGTATCCTTCTGATGGACAAGTTATATCTGTTGGACTTCCAATAGACATTCCTAATTATGGAGGACATCATCGGAGGAAAAATTCACCGCTTACACCACCGGATTCAGATGGCCCTGACTCTCCAGATGGAGACCAAGACAGCATGACAGGTGAATCATCAGTGCCACATTCCGCAGGAGTGAAGCTGCAGCAGGATGAAGCTTTCAGTCATAATTCCAGAGAATTACTGTCCCAGTCACTTAGCAGTGTTTCTGCTGAACCCAAACGGAAAAGAAAGAGGTCCTCTGAGTGCAGTGAAACGTTAACCACAAATGGCCTGTCAACCCTCAGACTTGGATCTTTGAAATCAGAGTCAGTAGATGATTACTGTGTGGACTGTAGCAGTTCTGAAAGTGTAGACTCTCCCGACCCTCAGCCCATTCCAGCCACACCTGATCCAGAAAACTCATATCAATGTCTAAAATGGATGCCATTTAAACCTGATGAATGCTGCAACCTGTATGATGGTGCTTCTCAAATAATACCTCCTCCTCAGTTCAGAGTGGATGCCGACAAAGGCTTTAACTACTCATTTGCAGATGAGGCCTTTGTCTGTCAAAAGAAGAATCACCTTCAGGTTACTGCCTATATGAGCCTCCAGTCTGAACAATCACCTAAGTATGTTCAAGTAGAGAATGAATTAAAACGCATTGAAAAATTCTGTCTGCACCTTTATGGAATAAAGATGGAATCTCAAGCTAGTAGCATTGGCGTAGAACAATCTCAAGCAGACAGAAGCAAGCGACACTATGAACCTCTACAATTTCAGATTTCTCCCAAAGAGCAAGCAAAGATCACAGTTGGAAGGCTACACTTCAGTGAGACGACAGCTAACAACATGAGAAAGAAAGGAAAACCGAATCCTGACCAGAGATATTTCTTGCTTGTTGTTGCGGTTTATGCTCATACAAAGAACAAGGAATATTTGGTCTGTGCTAATGTGTCAGAAAGGATAATTGTTCGGGCATCTAATCCAGGCCAGTTTGAGAATGACATGGAAGTTGTTTGGTCCAGAGGGCAAACTACAGACTCTGTTTTTCGAATGGGTCGTGTTGGTGTAAATACTGACAAGCCCGAGGAGGCACTGTCAGTGCACGGCAACTTGAAGGTGACAGGACGGCTTGTTCATCCTTCTGACATAAGAGTCAAGGAAAGCATACAAGAGGTGGACTCAAGAGAACAGCTTCGTAATGTGTCCAAAATGAAGCTCTACAGATATCGCTACAGTCGGGAATACCTCGAACATGCAGGCTTAACAACTGATGACTGTGTGGAGGAGGATACGGGAGTGTTGGCACAGGAAGTAAAAGAGGTCCTACCGGAAGCTGTAAAGGAGTCGGATGACTTGGTTTTTTCAGATGGAAAAACCATAGAAGGATTTTTAGTTGTCAACAAGGAAAGAATATTCATGGAGGGCGTAGGGGCAGTGAAGGAGCTTGTTAAACTCACTGACAATCTACAAGTGAGAATTAACGAACTTGAAACAGTCAACCAGAAATTTCAAAGGCGACGCTGTGATACTGTGAGCACGTTCAGCAGTTTGAGTTTGTCTCGCGGCAGCTCGTTCAGAGCATCGATAAGCAGCAAAAAACAGAACCAAGAACGTCGTAAGAAATGTCATCATCACCACCACTGCCACCATCACCATCATCATTGTGCCTGTAGGCCACACCAAGGTGAAGTGTATGACGAGCAAGGCTGGTGCTCACCGAAGTTCATGCAGTTTCTTATCGTCATTCTTGTTGTTGTCATGATTCTTAGCATTGGCGGAATGGCAATCATTTACGTTTTGGAAATTCAAGACGATGATTTGCCACAAAAGGACAGCGAGAAAAGGGCATCTGGCAGCCAATCCGGTTATCCAGAACTTCGCATCTTAGAGCACAACTACATTATAAAGTGCAATAACTGCAGTTCTACATCCAGTTCGTTGGTGTTGCTGTGTTCCAACAGTTTCAAGTATGACTGCCCAGAGCAGAAAAAACAGCCAAGGTTTGATACTTCTCTAAAACAGAAGTCACTTAGCGATTTCCTCCTGGGCCCGGTTGTTCGAAAGCCGATTAACGCTAATCTACGATTTAAAGTTAATCGAGGTGTTTATCTCGCTCTTTAA

Transcript

ANN33888-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y2G1	Myelin regulatory factor OS=Homo sapiens OX=9606 GN=MYRF PE=1 SV=3
Q3UR85	Myelin regulatory factor OS=Mus musculus OX=10090 GN=Myrf PE=1 SV=2
Q66IV1	Myelin regulatory factor OS=Xenopus laevis OX=8355 GN=myrf PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005322 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13887 all species →	MYRF_ICA	Myelin regulatory factor ICA domain	Domain	Interproscan
PF13884 all species →	Peptidase_S74	Chaperone of endosialidase	Domain	Interproscan
PF05224 all species →	NDT80_PhoG	NDT80 / PhoG like DNA-binding family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037141 all species →	Homologous_superfamily	NDT80 DNA-binding domain superfamily	Interproscan
IPR030392 all species →	Domain	Intramolecular chaperone auto-processing domain	Interproscan
IPR051577 all species →	Family	Myelin Regulatory Factor-like	Interproscan
IPR026932 all species →	Domain	Myelin gene regulatory factor, ICA domain	Interproscan
IPR024061 all species →	Domain	NDT80 DNA-binding domain	Interproscan
IPR008967 all species →	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13029 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0016540 all species →	Biological Process	protein autoprocessing	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24768	MYRF; myelin regulatory factor	EC:3.4.-.-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.