Gene detail

Detailed information of ANN33988-RA in Montipora grisea

Genomic Location: Scaffold_6476__1_contigs__length_26935:3760...5739
NR annotation: GJM17256.1, MAG: lysine--tRNA ligase [Thermodesulfobacteriota bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q3A9M2	Lysine--tRNA ligase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) OX=246194 GN=lysS PE=3 SV=1
Q9RHV9	Lysine--tRNA ligase OS=Geobacillus stearothermophilus OX=1422 GN=lysS PE=1 SV=1
A0R8E9	Lysine--tRNA ligase OS=Bacillus thuringiensis (strain Al Hakam) OX=412694 GN=lysS PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03061	4HBT	Thioesterase superfamily	Domain	Interproscan
PF00152	tRNA-synt_2	tRNA synthetases class II (D, K and N)	Domain	Interproscan
PF01336	tRNA_anti-codon	OB-fold nucleic acid binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR006683	Domain	Thioesterase domain	Interproscan
IPR006195	Domain	Aminoacyl-tRNA synthetase, class II	Interproscan
IPR004364	Domain	Aminoacyl-tRNA synthetase, class II (D/K/N)	Interproscan
IPR002313	Family	Lysine-tRNA ligase, class II	Interproscan
IPR004365	Domain	OB-fold nucleic acid binding domain, AA-tRNA synthetase-type	Interproscan
IPR045864	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan
IPR044136	Domain	Lysine-tRNA ligase, class II, N-terminal	Interproscan
IPR018149	Domain	Lysyl-tRNA synthetase, class II, C-terminal	Interproscan
IPR003736	Domain	Phenylacetic acid degradation-related domain	Interproscan
IPR029069	Homologous_superfamily	HotDog domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42918	LYSYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0004812	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006418	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0004824	Molecular Function	lysine-tRNA ligase activity	Interproscan
GO:0006430	Biological Process	lysyl-tRNA aminoacylation	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0000049	Molecular Function	tRNA binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04567	KARS, lysS; lysyl-tRNA synthetase, class II	EC:6.1.1.6	Transfer RNA biogenesis	ko03016	deepkoala