Gene detail

Detailed information of ANN33998-RA in Montipora grisea

Genomic Location: Scaffold_2548__1_contigs__length_41915:16192...18909
NR annotation: MCH9039791.1, formate dehydrogenase subunit alpha [Chloroflexota bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN33998-RA

ATGACAATCACGCTTGCAATCAACGGACAGCCTGTCGAGGTCAAAGAAGGGGCATCCGTCCTCGACGCCATAAACCAGTCAGGAACCTACATATCTCAGCTATGCAAAGACCCCGACATGAAGGCTATCGGCGCTTGCCGCACCTGCCTTGTGCAGGTCGAGGGAACGCGCGGCTATCCGGCGTCCTGCGCCTTGCCCGCGGCAGACGGCATGAGGGTATGGACAGAAACACCGGAGGCGCAGGCAATCCGCAAAGGCGTTCTCGAACTCACCCTCGCCATGTTTCCGTCAAACGGCGCGAATGGGGCGGACGGCGCGAAGAAGTACCGCGAGCTCTCCATTGCGGCGGACAGACACGGCATCACCACACCGAGCTGGCAGGGCAGGGAACGCGAGTCCGTGGACGCCAGCAATCCCGTATTCAACATTGCCATGGAGAGCTGCATACTTTGCCAGCGATGCGTGCAGGCGTGCCAGGACGGCCACCAGTTCATCGGGGCGATTGACCTGCTCGGCACGGGAACGGGCGGCAGGATAGGCACATTTATGGACAAGCCCCTCGTGGAATCGGTATGCACCACCTGCGGGCAGTGCCTTTCGGTCTGTCCGACCGGCGCGATAGAGGTCAAGAGTCCGCCGCCTAGACCGCTCAAGACGGTAACGACCACCTGCCCGTACTGCGGCGTGGGCTGCGGCATCAAGGCAGAGGTGGACGAAAGAGACCGCATCATTGCCATGCTGGACGACCCGGACAACCAGTCCAGCCTTGGGATGCTCTGTGTCAAGGGTCGGTTCGGGTACTCATTCGTGAACCACGAGGACAGACTGACCACGCCGCTAATCCGCAAGAACGGCGTCCTTACCGAGGCTTCGTGGGACGAGGCGCTCACGCTGGTTGCGGACAGGCTTTCGCAGTATCGCGGCGACGCCTTCGCTACGCTTTGCTCAGCCAAAGCCACTAACGAAGACGGCTATATCCAGCAGAAGTTTGCGCGGCTTGTCATGCAGAGCAACCACATTGACCACTGCACCCGGCTGTGCCACTCGCCGTCGGTAGAGGCGATGCTCACGGCGCTTGGCAGCGGCGCGACGAGCAACTCTTACCAGGATTACGAGGAAGCGGGATGCCTAGTCATCATCGGCTCGGACGCCAACTCCAACCATCCTGTCGCAGCCTCGCGGATGCGGCGCGCCGTCATCGAGCGCGGTGCAAAGCTTATCGTCATCAACCCGCGGCGCATAGAGATGTGCGACTTCGCGGAACTCTGGCTGCGCCCGCGCCCCGGCACCGATGTTGCCCTGCTGAACTCTATGGCAAAGGTTATCCTTGACGATGAGCTTGCCGACTGGGACTTTATCGACAACAGAACCGAGGACTTTGAGGAGTGGCGCCAGACCGTTGACAAGTACACGCTCGAGTACGCAGAGCGGATTACCGGCGTGTCTGCTGAGGATATTGCGAAGGCGGCGCGCATCTACGCCAAGCCGCCCTTCAGCGGATCGTGCCTAATATGGGGCATGGGCATCACGCAGCACACGATGGGCACTGCCAACGCGCACGGCTTGCTGAACCTGTCATTCGTGGCGGGCCAGCTGGGCAAGCCCGGCACGGGTATATCTCCCCTGAGGGGGCAAAATAATGTGCAGGGCTGCGGCGACGCAGGCTGCCTGCCCAACGCCTTCCCGGGCTATCAGGTCATCGGCGGCGATACGCTCGCCAAGTTCGAGGGCGCATGGGGAAACCACCCGCTGCCGCCGGAAAAGGGGCTTGTCATAACTGATATGGTGCCTGCCATAGACGAGGGGCGCATCAAGGCGATGTACATCACCGGCGAAAATCCGCTCCTCAGCGAACCTGACCTGCACCACGCCGAAGAGGTGTTCAAGAAGCTGGAGTTCCTGGTGGTTCAGGACATATTCATGCATGAGACGGCTGAAATAGCCGATGTGGTGCTGCCGGCGACATCATTCGCCGAAAAGGACGGCACATTCACGAACAGCGAGCGGCGCGTCCAGCGCGTCCGGAAGCTGGTAGAACCCATCGGACAGAGCCGCCCTGACTGGGAAATCGTACGCGATCTGGGCAGCCGCCTGAGCGAGCGGCTGTCGCTGGGCGTGGAAGACCAGTTCGCCTTCACTCACCCGTCGCAGATATGGGACGAAATGGCGCGCTCGACGCCCATCATAGCGGGCATATCATATGACAGGCTCGACAGCGAGGGCGGGATTCAGTGGCCCTGCCCTTCGCCCGACCACAGCGGCACGCGCTACCTCTATGAGAACGACTTTCCACGCGGGCCTAGGGCGAAGTTCGTGGCTTTCGACCAGGGTCCGCAGGCGGAGGAGCTTCCCACACGGCGCTTCCCGCTTATCCTGAACACGGGGCGCATCCTGTATCACTGGCACGGCGGCACGATAACCCGCCGGGCGTCCAATCTGCTGGCGCGCGCGCCGGAGCTTCCGATTAGCATCAGCGCGGACGACGGCGACAGGTACGGCGTGTCAGACGGCGAATGGATACGGCTGAAGTCCCGGCGCGGCGTGCTGGAGGGGAGAGCGTCCTATACGGACAAGATGCGCGCGGGCGAGGTGTTCGTACCATTCGTGAAGCTCCAGGAACACGCCGCAAACTTCCTGACCAACGCTGCGCTCGACCCGAACTCGCGCATACCGGAGTACAAGGTGTGCGCTGTGCGGATAGAGAAGATAGAGGAATAA

Transcript

ANN33998-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P77908	NADP(+)-dependent formate dehydrogenase subunit alpha OS=Moorella thermoacetica OX=1525 GN=fdhA PE=1 SV=3
P61159	F420-dependent formate dehydrogenase subunit alpha OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=fdhA PE=3 SV=2
Q6LXQ1	F420-dependent formate dehydrogenase 1 subunit alpha OS=Methanococcus maripaludis (strain DSM 14266 / JCM 13030 / NBRC 101832 / S2 / LL) OX=267377 GN=fdhA1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0018487 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01568 all species →	Molydop_binding	Molydopterin dinucleotide binding domain	Domain	Interproscan
PF00384 all species →	Molybdopterin	Molybdopterin oxidoreductase	Family	Interproscan
PF00037 all species →	Fer4	4Fe-4S binding domain	Domain	Interproscan
PF13510 all species →	Fer2_4	2Fe-2S iron-sulfur cluster binding domain	Domain	Interproscan
PF04879 all species →	Molybdop_Fe4S4	Molybdopterin oxidoreductase Fe4S4 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006657 all species →	Domain	Molybdopterin dinucleotide-binding domain	Interproscan
IPR006656 all species →	Domain	Molybdopterin oxidoreductase	Interproscan
IPR017900 all species →	Conserved_site	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	Interproscan
IPR009010 all species →	Homologous_superfamily	Aspartate decarboxylase-like domain superfamily	Interproscan
IPR050123 all species →	Family	Prokaryotic molybdopterin-containing oxidoreductase	Interproscan
IPR006963 all species →	Domain	Molybdopterin oxidoreductase, 4Fe-4S domain	Interproscan
IPR006478 all species →	Family	Formate dehydrogenase, alpha subunit	Interproscan
IPR001041 all species →	Domain	2Fe-2S ferredoxin-type iron-sulfur binding domain	Interproscan
IPR017896 all species →	Domain	4Fe-4S ferredoxin-type, iron-sulphur binding domain	Interproscan
IPR036010 all species →	Homologous_superfamily	2Fe-2S ferredoxin-like superfamily	Interproscan
IPR041924 all species →	Domain	Formate dehydrogenase H, N-terminal	Interproscan
IPR027467 all species →	Binding_site	Molybdopterin oxidoreductase, molybdopterin cofactor binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43105 all species →	RESPIRATORY NITRATE REDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0043546 all species →	Molecular Function	molybdopterin cofactor binding	Interproscan
GO:0008863 all species →	Molecular Function	formate dehydrogenase (NAD+) activity	Interproscan
GO:0015942 all species →	Biological Process	formate metabolic process	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0051539 all species →	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00123	fdoG, fdhF, fdwA; formate dehydrogenase major subunit	EC:1.17.1.9	Methane metabolism	ko00680	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.