Gene detail

Detailed information of ANN34164-RA in Montipora grisea

Genomic Location: Scaffold_1781__1_contigs__length_49885:5793...6892
NR annotation: MXY54426.1, PDZ domain-containing protein [Gammaproteobacteria bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D0ZY51	Serine endoprotease DegS OS=Salmonella typhimurium (strain 14028s / SGSC 2262) OX=588858 GN=degS PE=3 SV=1
P0AEE4	Serine endoprotease DegS OS=Escherichia coli O157:H7 OX=83334 GN=degS PE=3 SV=1
P0AEE3	Serine endoprotease DegS OS=Escherichia coli (strain K12) OX=83333 GN=degS PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0234422 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13365 all species →	Trypsin_2	Trypsin-like peptidase domain	Domain	Interproscan
PF13180 all species →	PDZ_2	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR001940 all species →	Family	Peptidase S1C	Interproscan
IPR009003 all species →	Homologous_superfamily	Peptidase S1, PA clan	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22939 all species →	SERINE PROTEASE FAMILY S1C HTRA-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006515 all species →	Biological Process	protein quality control for misfolded or incompletely synthesized proteins	Interproscan
GO:0042597 all species →	Cellular Component	periplasmic space	Interproscan
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04691	hhoB, degS; serine protease DegS	EC:3.4.21.-	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.