Gene detail

Detailed information of ANN34201-RA in Leptoseris scabra

Genomic Location: Scaffold_19__1_contigs__length_2694962:1016314...1029247
NR annotation: XP_044173325.1, uncharacterized protein LOC114956231 isoform X2 [Acropora millepora]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN34201-RA

ATGCGAACGCTCGGAAACGAACGATATGAACGCTGCAAACGAACGCTACGAACGCTCCAGATGAACGATAGAAACGCTGACCAAATGCCTCTGAGCTCCTGGGTCTGCAGCAAATGTGACAAACTCCAAATAGGTGAATGTTCAATTCATGGTAATCTGCAATGGGTTAAGGAACCTTCAGCTGTAACAGTCACAGAGGGGCTGACAAAAGCAAGGGCCACAATTCCCAATAACATGGATTTGAGGTCGTCAAGTATTCCAGATGCTGGTCTGGGTATCTTTGCCAAAGAGAGATTTGAAAGTGATGTGGTGTTTGGACCTTACTGGGGTCAAAAGATAGGTGTGGCAGATGTAACTCCAAACATGGACCAGAGCTACATGTGGGATATAATTGAGAATGGACTTGTCACACATGTTGTTGATGCTCGAGATGAGGGTCACAGTAACTGGCTTCGCTTTGTCAATTGCGCTCGCAATGAAGATGAGCAAAATCTAATAGCCTTCCAGTATCGAGGGGACATATACTATCGCTCATACAAAGTGATTGAACCGGGCATGGAACTGCTTGTATGGTATGGAGACAAATATGCCTGCGATTTGGATATCCTTGACAAGGATAAAAAACCTGCAGACGGACCAATTCAATGTCAGAAGTGTTTCATGATCTGTTCAGGGCCCATTTCCCTTGCCACTCACAACAAGTTCCGCTGCCAAATGAACAGTGAACACGATCGCTGGCGCTGCATGCACTGCGACAGAAGCTTCAAATCACAGTCCTCGCTTCATATCCATAAGAACATTCACAAAGGCCTGAAGCCGTTCGTTTGCAAAATCTGTGGAAAGGCTTTCTCGCATCGAGGGTCGAGAAAGAGACACTATTCTTTGCATAATGCCGAAAGAGAGTCTGTCACCTGCAAACCTTGTGGTAAAGTTTTCATCGATAAGAATAGTCTCAAGGTGCACATGAGAAAATTTCATAAGTGTCAATCTTCATTAGGCTGTCATTCTGCTGGGAATCACGCAAAGCCAGGCGGAATCAATTGCAGAACATGTGGAAAACTGTTCCGAAATGAAATAAACTTACGTAAGCACGAGGCTTTACATAAGACGACTACAAGCGTACGAAAATGTCAACATTGTGGTCTTTGTTTTACGTCTGCAGTTTCTCTTTCCAACCACATGAGAATGCATCAAAGCGAGACAACCACGAATGTTTGTTCCATTTGCAAGTTAAGGTTTACTTATTCCTCCAACTTAGCTAGGCACATGCGAGACAAACACCCAGCTGTAAAGGTTATCAAATGTGGAATATGTTCTAAAGTCTGTGCAGATAAGCGTCTTCTAGCATTACACGTGGCTATCAGGCACCCAGCGAAACGCGGCTTTTTTAGTAAACATCGTGTACTTCAGCAAGGAAAGGTGAAGAAAAACCTGCAACCCCCAAAGAAAGCAATCTCCTTGGTCGACTCCGTTAAATGCAAGAAATGTAAGCTCACGGTGCCGAGGAAAACGTTACGTGATCACATGCGCATCCACCAGACGATGAATGCAAATGCGAACACTGTGGCAAGACAAGTGGTTGGAATTAAGAAACCTGGAAATTCATTGAAAGAAAAGCGTCAGATTTCTTACAATCATTCCAAGGATAGTTTTGTAGGTAATCAGGGCGGGTTCAGATGCGAATTGTGTCAGAAAGTTTTTCCAACATTGCAGCTAATGCACTGTCATAAAGGTTCCCACTTCAGAAAAAAGTCTGCGTCGCCTTCTACCATCAGTACCCCATCCACAGTACCACCAAGAGAAAATGAAGGTCACACCAAACACAGCACTAAGAAGCTAAGATGCAACTTCTGCGATAAGGAGTTTTCTTCTTACGCTATGCTTTGTGGGCATAAAGGCATCCACTTTAGAAAGCGGCGTCCTGGAAGTAGTCGTAACCATTTAATTACCTCGGCGAAGGCACTAAACTTGGATAAATGTCAGCAGAATTCCTCGACTACAGAATCTTGTAGTCCTTATTGGTCTTCAGTGAAGCACGCTGGAAGATTTTGTTGTCAGGTCTGCAACAAGTCATTTCTCACAGAGGGATCTTTGCGATCGCACAAAACTCACCACAGTAGAGCGCGGCTATCAAATGTTTCTTCTCCTAATCCTTTGTCGGAAAGTCCCCAGGAAAGTTTAGCAGAATCACAAGGAGACAGTAAAGGGCTAAAGAACGTTGCGTTTAGTGGAGATTTCAAGTCGAAGATATCGTCGCACTTGGACAAGAATAGTCATGCTACGACAGTTAAGAAGCTTCTTGGGAATAGCACGCACAAGAATTTCTTCCAAAAAGGAAAGCGCCACTCTGGGAAAGAATCAACAAAAACTTCTAGTGACTTTTCAAACCAGAAAGTAACGTCTACCAGTGAATGTAAAGTATATATCTGCGGGGAGTGTGGGAGGAAATTCCACTCCAAAACGACTCTAAACAGTCATAAAGGGCATCACAAAAGGGCAAATTCCTTTAAGCGTTTTAAAGTCTCAACAACCAATCCTTCTAGTGACTTTTCAAACCAGAGAGTATCGTCTACCAACGAACGTAAACTATACATCTGCGGAAAGTGTGGAAAGACATTCCACTCCAAAATGACTCTAAGTCGTCATAAAGGGCATCACACAAGGGCAAATTCTTTCAAGCGTTTTCATAACCACCACGTCACCAAAGCAAAGATGAGATCCAAAGTAATTCTGTATGGGAATGTTTCAAAGCCGTATCGATGCAGCACTTGCTTAGAGTCTTTTCAGTCAAGTTCTGCTCTGATTAACCACAAGCGTCGATCACACATTGGAGTAAACGCCGACTTTGTCTGCCCGTTCTGCGACAAAACATTTTCAAGCAAGAAGACTCTGTCCGTACACAAGAAGCGTCTGCACAGCGTAGGAGACCCATTTTCGTGCTTGCAGTGTAACCGTCAATTTTGTACGAAGTACTCTCGAAACAACCATGTGTGTCGTGTGGAGGAGAGAAACGAGCGGCCAGTTGAGTCAGAGCAGGAGTTGAGGTCAAACCCAAATGTTGATGAAAGTACTGAAGAGAAACATGAGTGCAACGTTTGTCTTGAGTCCTTTCCGTCCAAACGTGCCTTGTGTAACCACAAACGCTCGCACGCTGGAAGTCGTGCTCCTTTCGTATGTTCAATTTGTCAACAAGGACTTTCGTCAAAGCACAGTCTATTGAGACACAAAAAGAATCAGCACAGTACAACGCAAGGCACTTACCTGCAATGTAATGACCAAGTCCAGTCGAAAGACAACCAAAATGATCAGACACTGAATGACAGCGATGTAAGTTCGGTACTGGAAAACTCCTCTTCGCTCAGGAGTACCGCGCATGGTATCTCGCATTTTCCTTGTCTGTCTTGTAACAAGCAATTCATGACCTCTAGTGGCCTTTACAAGCATGAACGTAAGAACCATGGTAAAAGCAAGCGCGCTTCTGCTAGTAGTGTGCAAAGCATCATATCGTTGCATGATCAACATACCTGCAAACTAGAAACGAAAAACAGCAACAGTCCTTGGGAATGCCAGTACTGTGAGAAAGAATTCCAAACTGAATTTGGTTTAACTAGGCATGTCGAGAAAAGACACGACAAGAGAGTATGGTTGGCTCATCAACAGTCGGAAGCGAAAAGTAACAGCAGGCATCAGAAACGTGTGTACTGTCAGAACGAAATCAGGACTATCCATGACGTAAAGAAGTATGGCTTAAGAAAACACTCGAGGAGCAGGAAGGTTTCTGGCGTTCAAGGTTACAAACCAGAAGTCAAAGCCCAGTCAAGAATTGGTTTGATCAGCCCAATGACGGCGTCAAAACACCACACAGATAGGGCATTCAGGTGCCAATATTGCCACGAAGGATTTTCAACAATAAATGGACGCTACAAGCATATCTTGCTTTCACATGGAAGTGAATTGATTTCCCCTTTGTCTGCTCCTCACGAAAGGTCGAAGAATCAATCTGCAATTGTCCATAAAGATATCATGGCCACAGACAGCCTTGCACAAGACAGCAGACAGACTGGCCAGAATGGAGTCTTCAGTGATGACAACCTTCATCTTAGTGAGGCAAAGTCCAGTGCGGTCAATCATTTCATTGAAAGGGGCTCACACGATGGAAGAAGTGCTCCTTTCATGTGTTCCATCTGTCAGAGAGGACTTTCGTCAGAGAGAAGTCTATTAAGACACAAAAAGAGTCAGCACGGTACAACCCAATCCACTCTCCTGCAGTGTAATGGCCAATTCGAGTCGAACGACAATCAATGTAATTATGCACTGAATGAGAGCTCCGAGAATCGATCTGCAAGTGTCCACGAGGATGTTATGGACGCAGACAGCCTTGTGCAACAAGGCAGCAGACAGACTGGCCAAAATGGAATCTTCAGTGATGACAACCTTCATCTTAGTGAGGCAAAGTCCAGTACGGTCAATCATTCCATTGAAAGGCGCCCACACGATGGAAGAAGTGCTCCTTTCATGTGTTCCATCTGTCAGAAAGGACTTTCGTCAGAGAGAAGTCTATTAAGACACAAAAAGAGTCAGCACGGTACAACCCAATCCACTCTCCTGCAGGGTTATGGCCAAGTCGAGTCGAAAGACAATCAAAGTGATCATACAGTGAATGATAGTTTAGAGAATCAATCTGCAACTGTCCATGAAGATATTATGGACACAGACAGCCTTGCACAACAAGACAGCAGTCAGACGGGCCAGAATGGAGTCTCCAGTGATGACAACCTCCATCTTAGTGAGACAAACTTCAATACAGTCAAACATTCGATTAAAGGAAAAACCAAACGCGCCAGTTTGGGTTGCAAGTTTTCTTGTCGTTACTGTACAAAGCGGTTTTTCAGTAAGGGTGGCCGTAGACGCCATGAATTAAAATTCCACGAAAAACGACCAGTGGGTTCCTCATCTGCTTTGGCCAAACAAAAAGGTCGCAAGATTGAAAGAACAAACCCTTTTGACAAAGCTACGTCTTCGTGTGAAAACGATTTATCTGCAAGCGAAAATTGCGAAGAAAAACCACTCGTGAGATCCTCGTTCTATCGTGACGATACCAAAACCGCCCATGGCATCAATTTGCAACCAACAGTCAAGGCGTTTTCATGCCAGCACTGCCCCAGACAATTCTTCAGCATTAGTGCTCGTTACAAGCACATTTTGCTGGCTCATTCAGAAGAACCCAAAGTTTGTCAGCTGGATACAAAAGTTGCCAATGAAAGCTCAGCCACAAAATCTAGGGAAACTTTATTTTCTTACGATGATCGCAGCAACGCTTCTTTAGTGCCTCCTGTAGAAAGGAAGCGGGCCTCGTCGAGTTCATGTAGTCAGCCGTTAAACAAGAGATTCAAATCCCAGAAGCTGGCACCCGTTGGTGGCTTGATCATTGAGAATGCCTCTAATTCTGTCCACCATAAGACAGTACCACTAACAAGTAGACAGACTTCAACCAGAACTAAGGCATTTGAATGCAAGTTCTGTAGCAAGAGCTTCTCCATGTGCAGTCTGCGATACAAACACTTCCTCCTTGTTCATTCCAGATCTTGCGCTTTGGCAGAGCAAGGTTTTGTTACCTTGGACAATGGTTCTGTCAACAGGCCTCTGCAGACATTGCCACACCAGACTACCAGCAAAGACAATGTATCCATAGGACATGATTTAAACGAAGGCTTCGTCTCACAAGACAAGGTTGTCGAAATCCTCTTTTCTGTTCCAGACAATGACTCAAAAGTGGTATCAATTTTTGAAGAAGACCTTGAACCGTACAATTGCCGGTTCTGTTCCACATTTTTCAGATCAAGAGGAGACTTGGTTTCCCATGTTAACGAAAAACACAACAATGCTGGCAAAGCTATGTGTAGGATCTGTAGCCCGTCGAGACCAGCCCTGAGGACCATTTCAGATCCTTTCCAAAGCAACAGTTTGAAAAGCCTGCGAAACAGACATACCACTCGCTCCAAATTGACTCTCGGTAAAGGGATGTCATTGTGTGGAAAGAATGTTGCTCAAACAAAATTGCCTATGCGTCCTACCAGGAAATCGAATATTCACCGAGAGAAGGGGTTTCGATGCGATATCTGTCCTCTAATTCTCAGCGCCAAATCGAAAGTTGAGCGCCACAAGCGGACCAAGCATTGTGATGAAAAACCATTCCGGTGTCATGTCTGTGGGTTTGCCACCAAGAGAGAGGACTATTTGAATATACATAAACGAAGACATTGTAAAGGGTGA

Transcript

ANN34201-RA

Protein

ANN34201-RA

MRTLGNERYERCKRTLRTLQMNDRNADQMPLSSWVCSKCDKLQIGECSIHGNLQWVKEPSAVTVTEGLTKARATIPNNMDLRSSSIPDAGLGIFAKERFESDVVFGPYWGQKIGVADVTPNMDQSYMWDIIENGLVTHVVDARDEGHSNWLRFVNCARNEDEQNLIAFQYRGDIYYRSYKVIEPGMELLVWYGDKYACDLDILDKDKKPADGPIQCQKCFMICSGPISLATHNKFRCQMNSEHDRWRCMHCDRSFKSQSSLHIHKNIHKGLKPFVCKICGKAFSHRGSRKRHYSLHNAERESVTCKPCGKVFIDKNSLKVHMRKFHKCQSSLGCHSAGNHAKPGGINCRTCGKLFRNEINLRKHEALHKTTTSVRKCQHCGLCFTSAVSLSNHMRMHQSETTTNVCSICKLRFTYSSNLARHMRDKHPAVKVIKCGICSKVCADKRLLALHVAIRHPAKRGFFSKHRVLQQGKVKKNLQPPKKAISLVDSVKCKKCKLTVPRKTLRDHMRIHQTMNANANTVARQVVGIKKPGNSLKEKRQISYNHSKDSFVGNQGGFRCELCQKVFPTLQLMHCHKGSHFRKKSASPSTISTPSTVPPRENEGHTKHSTKKLRCNFCDKEFSSYAMLCGHKGIHFRKRRPGSSRNHLITSAKALNLDKCQQNSSTTESCSPYWSSVKHAGRFCCQVCNKSFLTEGSLRSHKTHHSRARLSNVSSPNPLSESPQESLAESQGDSKGLKNVAFSGDFKSKISSHLDKNSHATTVKKLLGNSTHKNFFQKGKRHSGKESTKTSSDFSNQKVTSTSECKVYICGECGRKFHSKTTLNSHKGHHKRANSFKRFKVSTTNPSSDFSNQRVSSTNERKLYICGKCGKTFHSKMTLSRHKGHHTRANSFKRFHNHHVTKAKMRSKVILYGNVSKPYRCSTCLESFQSSSALINHKRRSHIGVNADFVCPFCDKTFSSKKTLSVHKKRLHSVGDPFSCLQCNRQFCTKYSRNNHVCRVEERNERPVESEQELRSNPNVDESTEEKHECNVCLESFPSKRALCNHKRSHAGSRAPFVCSICQQGLSSKHSLLRHKKNQHSTTQGTYLQCNDQVQSKDNQNDQTLNDSDVSSVLENSSSLRSTAHGISHFPCLSCNKQFMTSSGLYKHERKNHGKSKRASASSVQSIISLHDQHTCKLETKNSNSPWECQYCEKEFQTEFGLTRHVEKRHDKRVWLAHQQSEAKSNSRHQKRVYCQNEIRTIHDVKKYGLRKHSRSRKVSGVQGYKPEVKAQSRIGLISPMTASKHHTDRAFRCQYCHEGFSTINGRYKHILLSHGSELISPLSAPHERSKNQSAIVHKDIMATDSLAQDSRQTGQNGVFSDDNLHLSEAKSSAVNHFIERGSHDGRSAPFMCSICQRGLSSERSLLRHKKSQHGTTQSTLLQCNGQFESNDNQCNYALNESSENRSASVHEDVMDADSLVQQGSRQTGQNGIFSDDNLHLSEAKSSTVNHSIERRPHDGRSAPFMCSICQKGLSSERSLLRHKKSQHGTTQSTLLQGYGQVESKDNQSDHTVNDSLENQSATVHEDIMDTDSLAQQDSSQTGQNGVSSDDNLHLSETNFNTVKHSIKGKTKRASLGCKFSCRYCTKRFFSKGGRRRHELKFHEKRPVGSSSALAKQKGRKIERTNPFDKATSSCENDLSASENCEEKPLVRSSFYRDDTKTAHGINLQPTVKAFSCQHCPRQFFSISARYKHILLAHSEEPKVCQLDTKVANESSATKSRETLFSYDDRSNASLVPPVERKRASSSSCSQPLNKRFKSQKLAPVGGLIIENASNSVHHKTVPLTSRQTSTRTKAFECKFCSKSFSMCSLRYKHFLLVHSRSCALAEQGFVTLDNGSVNRPLQTLPHQTTSKDNVSIGHDLNEGFVSQDKVVEILFSVPDNDSKVVSIFEEDLEPYNCRFCSTFFRSRGDLVSHVNEKHNNAGKAMCRICSPSRPALRTISDPFQSNSLKSLRNRHTTRSKLTLGKGMSLCGKNVAQTKLPMRPTRKSNIHREKGFRCDICPLILSAKSKVERHKRTKHCDEKPFRCHVCGFATKREDYLNIHKRRHCKG

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E9Q3T6	PR domain zinc finger protein 14 OS=Mus musculus OX=10090 GN=Prdm14 PE=1 SV=1
Q9GZV8	PR domain zinc finger protein 14 OS=Homo sapiens OX=9606 GN=PRDM14 PE=1 SV=1
P0C6Y7	Histone-lysine N-methyltransferase PRDM9 OS=Rattus norvegicus OX=10116 GN=Prdm9 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000194 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF21549 all species →	PRDM2_PR	PR domain zinc finger protein 2, PR domain	Domain	Interproscan
PF13912 all species →	zf-C2H2_6	C2H2-type zinc finger	Domain	Interproscan
PF16622 all species →	zf-C2H2_11	zinc-finger C2H2-type	Domain	Interproscan
PF13894 all species →	zf-C2H2_4	C2H2-type zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR044417 all species →	Domain	PRDM7/PRDM9, PR/SET domain	Interproscan
IPR041697 all species →	Domain	Zinc-finger C2H2-type 11	Interproscan
IPR001214 all species →	Domain	SET domain	Interproscan
IPR050527 all species →	Family	Snail/Krueppel C2H2-type Zinc-finger	Interproscan
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan
IPR003604 all species →	Domain	Matrin/U1-C-like, C2H2-type zinc finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24388 all species →	ZINC FINGER PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0042054 all species →	Molecular Function	histone methyltransferase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN34201-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.