Genomic Location: Scaffold_6305__1_contigs__length_27341:13458...14550
NR annotation: MCI5047654.1, SRPBCC family protein [Aquisalinus sp.]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN34278-RA |
| Transcript |
| ANN34278-RA |
| Protein |
| ANN34278-RA |
| UniProt accession | Description |
|---|---|
| A9IZA0 | Large ribosomal subunit protein bL19 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) OX=382640 GN=rplS PE=3 SV=1 |
| A7HT09 | Large ribosomal subunit protein bL19 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) OX=402881 GN=rplS PE=3 SV=1 |
| B6JAQ7 | Large ribosomal subunit protein bL19 OS=Afipia carboxidovorans (strain ATCC 49405 / DSM 1227 / KCTC 32145 / OM5) OX=504832 GN=rplS PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0014407 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF10604 all species → | Polyketide_cyc2 | Polyketide cyclase / dehydrase and lipid transport | Family | Interproscan |
| PF01245 all species → | Ribosomal_L19 | Ribosomal protein L19 | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR008991 all species → | Homologous_superfamily | Translation protein SH3-like domain superfamily | Interproscan |
| IPR001857 all species → | Family | Large ribosomal subunit protein bL19 | Interproscan |
| IPR019587 all species → | Family | Polyketide cyclase/dehydrase | Interproscan |
| IPR038657 all species → | Homologous_superfamily | Large ribosomal subunit protein bL19 superfamily | Interproscan |
| IPR018257 all species → | Conserved_site | Large ribosomal subunit protein bL19, conserved site | Interproscan |
| IPR023393 all species → | Homologous_superfamily | START-like domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR15680 all species → | RIBOSOMAL PROTEIN L19 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003735 all species → | Molecular Function | structural constituent of ribosome | Interproscan |
| GO:0005840 all species → | Cellular Component | ribosome | Interproscan |
| GO:0006412 all species → | Biological Process | translation | Interproscan |
| GO:0022625 all species → | Cellular Component | cytosolic large ribosomal subunit | Interproscan |
ANN34278-RA.Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
